Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 0.0e+00 2640.9 1366 100.0
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 0.0e+00 1920.2 1381 75.2
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.1e-273 947.6 1352 47.4
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.9e-271 939.5 1351 47.2
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.7e-267 925.2 1351 46.4
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.6e-264 916.4 1341 45.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.6e-261 906.0 1326 47.0
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 5.7e-251 872.1 1353 45.2
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 8.5e-247 858.2 1244 45.0
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 3.7e-242 842.8 1303 43.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.2e-232 811.2 1285 43.1
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.5e-232 809.7 1340 43.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 5.9e-232 808.9 1241 44.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.3e-231 807.7 1410 42.8
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.8e-231 806.2 1340 43.2
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 5.2e-228 795.8 1386 41.8
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.1e-222 778.1 1275 41.8
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.5e-222 777.7 1326 43.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 8.9e-220 768.5 1274 42.2
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.2e-219 768.1 1512 39.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.6e-216 757.7 1358 40.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.0e-215 755.0 1199 43.0
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 8.3e-202 708.8 1349 41.5
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.9e-198 697.6 1488 37.2
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 5.6e-198 696.0 1333 41.0
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 2.1e-189 667.5 1516 37.3
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.6e-187 660.6 1516 37.1
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.6e-187 660.6 1347 40.5
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 7.6e-187 659.1 1298 41.8
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 4.0e-180 636.7 1314 41.1
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 4.9e-178 629.8 1497 35.9
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.9e-174 617.8 1498 35.9
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.3e-167 595.1 1502 35.3
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 2.3e-167 594.3 1343 38.0
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.1e-166 592.0 1344 37.8
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.1e-166 592.0 1500 35.3
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.5e-166 590.9 1343 37.8
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 9.6e-166 589.0 1391 37.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.1e-164 583.9 1341 37.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.5e-163 581.6 1374 36.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 1.7e-162 578.2 1499 35.6
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.9e-162 577.4 1507 36.2
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 8.4e-162 575.9 1335 37.5
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.1e-157 561.2 1530 35.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.3e-150 537.3 1265 36.2
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 4.5e-147 526.9 1124 40.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 2.2e-146 524.6 1161 37.1
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.6e-144 517.3 1376 35.3
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.4e-140 505.4 1191 36.8
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.4e-137 495.4 1474 34.7
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 4.5e-131 473.8 1318 33.5
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 7.2e-129 466.5 1311 33.6
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 3.0e-127 461.1 1300 33.7
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 7.0e-124 449.9 1092 36.4
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.7e-122 445.3 1158 33.7
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 5.5e-121 440.3 1328 33.7
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 6.3e-117 426.8 1298 33.1
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 3.5e-115 421.0 1339 31.3
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 5.5e-113 413.7 1361 30.7
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 9.5e-113 412.9 1308 32.2
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.2e-112 412.5 1330 32.3
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.1e-108 397.9 1384 30.0
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.4e-103 382.5 1162 33.0
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 6.8e-103 380.2 553 44.3
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.7e-99 368.2 1321 30.9
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 5.2e-95 354.0 1319 28.7
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.6e-94 351.7 1461 29.8
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.5e-89 335.1 291 59.1
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 2.1e-83 315.5 774 36.6
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.3e-81 308.1 904 31.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 8.1e-80 303.5 1416 28.8
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.3e-77 296.2 888 34.1
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 3.2e-76 291.6 1259 28.4
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 6.6e-74 283.9 684 36.0
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.5e-73 282.7 658 36.3
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-73 282.7 1041 30.3
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 5.4e-68 264.2 670 36.9
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.0e-66 260.0 1204 28.4
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.3e-66 259.6 674 34.0
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.9e-66 258.1 707 34.4
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 1.1e-65 256.5 817 31.8
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.8e-64 251.9 693 33.6
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.2e-62 246.5 1337 26.9
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.1e-52 213.4 665 32.5
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.9e-52 212.6 1032 28.6
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.6e-51 209.5 357 40.9
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 2.1e-51 209.1 1110 28.2
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 2.3e-50 205.7 954 27.6
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 1.4e-47 196.4 1104 26.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 9.0e-47 193.7 1239 25.8
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 3.8e-45 188.3 1162 27.5
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 6.5e-45 187.6 1328 25.3
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 8.4e-45 187.2 1254 25.7
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 2.1e-43 182.6 1267 26.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 5.7e-41 174.5 1304 25.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-40 172.9 299 39.1
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.2e-40 172.6 1282 25.9
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.9e-35 154.1 501 33.3
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.9e-34 151.8 1324 24.5
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.9e-33 149.4 1126 25.2
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 3.3e-33 148.7 1226 25.3
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 2.4e-31 142.5 777 27.5
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 4.1e-31 141.7 1021 25.6
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 6.9e-31 141.0 1042 25.7
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-30 140.2 374 34.0
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.4e-30 138.7 328 36.3
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.0e-29 137.1 581 30.3
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 2.7e-27 129.0 1037 25.7
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.7e-27 129.0 351 32.5
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 8.2e-24 117.5 1026 24.8
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 2.4e-23 115.9 1025 25.2
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 5.3e-23 114.8 996 25.2
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 8.5e-21 107.5 1031 25.4
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.5e-20 105.9 280 34.6
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 1.4e-18 100.1 1029 24.7
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 3.0e-18 99.0 457 27.8
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.8e-18 97.4 451 27.1
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.0e-17 96.3 893 26.7
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.3e-17 95.5 784 26.1
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.7e-16 93.2 138 42.8
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.0e-15 87.8 210 36.2
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-14 85.1 352 27.6
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.5e-13 81.3 126 43.7
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.5e-13 80.9 160 37.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 6.1e-11 74.7 761 24.0
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 8.0e-11 74.3 767 23.6
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.0e-10 72.4 834 24.8
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 5.2e-10 71.6 100 41.0
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-09 69.7 109 41.3
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 2.2e-08 66.2 361 28.3
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 8.2e-08 64.3 1502 22.8
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 3.1e-07 62.4 258 30.6
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.1e-07 62.0 46 69.6
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.3e-07 61.6 279 30.1
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 5.3e-07 61.6 268 33.2
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 1.6e-06 60.1 201 30.3
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.0e-06 59.7 89 40.4
BcaC04g19101 Brassica carinata HOM05D010678 ORTHO05D006673 2.7e-06 59.3 97 44.3
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 2.7e-06 59.3 140 30.0
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 3.5e-06 58.9 175 29.1
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.9e-06 58.2 43 67.4
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.9e-06 58.2 43 67.4


User provided reference genes

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