Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 2302.3 1199 100.0
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1758.0 1221 76.9
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1703.3 1219 75.1
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1694.1 1226 74.3
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1686.0 1251 72.4
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1666.7 1252 72.4
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1660.2 1210 73.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1636.3 1214 72.9
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1630.2 1219 72.3
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1628.2 1227 71.8
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1625.1 1227 71.7
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1624.0 1219 71.9
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1623.6 1218 72.5
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1622.8 1251 71.1
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1618.6 1216 71.9
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1617.8 1227 71.5
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1613.2 1215 72.4
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1588.9 1215 71.7
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1562.7 1222 69.9
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1550.4 1216 70.0
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1547.7 1214 68.2
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1543.9 1215 69.1
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1540.8 1231 67.7
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1540.0 1220 69.3
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1539.6 1213 67.9
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1533.9 1234 69.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1533.1 1217 68.1
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1533.1 1214 68.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1521.9 1231 67.2
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1521.1 1217 69.2
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1520.8 1149 70.7
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1520.4 1218 68.6
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1520.0 1231 67.0
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1518.4 1231 66.9
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1514.6 1216 67.1
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1514.2 1149 70.4
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1511.5 1147 71.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1510.4 1161 70.2
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1506.1 1215 69.1
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1505.7 1217 67.1
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1498.4 1220 67.2
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1491.9 1154 68.6
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1488.0 1212 67.3
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1486.9 1217 67.9
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1476.8 1217 67.2
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1476.8 1217 66.2
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1473.4 1196 68.0
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1469.5 1217 67.1
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1469.5 1189 67.7
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1467.6 1217 66.7
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1465.3 1217 66.6
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1461.0 1222 66.9
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1459.9 1242 66.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1455.3 1219 66.4
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1454.5 1418 58.7
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1454.1 1194 66.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1446.8 1222 66.3
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1443.7 1250 65.4
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1442.9 1260 64.6
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1442.9 1260 64.6
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1442.6 1264 64.6
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1441.0 1221 64.9
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1222 65.5
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1222 65.5
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1433.3 1223 65.4
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1221 66.0
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1431.4 1217 65.9
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1197 65.3
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1220 65.7
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1426.8 1217 65.5
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1425.6 1234 63.5
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1421.4 1223 64.1
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1218 63.9
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1219 64.2
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1406.0 1220 64.9
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1404.4 1222 63.5
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1396.3 1177 65.5
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1395.2 1156 67.3
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1389.4 1358 59.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1388.6 1216 64.3
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1386.3 1211 63.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1382.9 1207 64.4
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1378.6 1207 64.0
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1373.6 1138 65.4
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1373.6 1217 63.4
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1360.9 1192 63.6
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1347.0 1248 61.2
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1340.1 1150 63.8
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1315.1 1248 60.0
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1307.4 1196 61.5
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1300.0 1156 63.5
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1261.1 1026 66.6
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1254.2 1199 59.5
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1201.4 1185 59.4
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1198.3 1076 61.4
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1176.0 1114 59.1
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1171.0 1202 58.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1167.9 1072 60.5
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1122.5 834 72.7
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1116.7 1216 55.0
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1108.2 981 62.9
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 2.4e-309 1065.8 1182 53.7
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 4.9e-299 1031.6 1129 51.9
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 8.1e-294 1014.2 1161 50.7
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 3.3e-279 965.7 1226 50.2
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.9e-275 952.6 773 68.8
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 5.3e-269 931.8 680 71.6
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.3e-259 900.6 740 64.9
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.5e-250 869.8 950 52.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-245 853.6 674 67.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.4e-231 806.2 1263 41.6
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.8e-229 800.4 637 67.2
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.0e-224 784.6 1255 41.4
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.4e-221 774.2 668 62.0
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 3.9e-219 766.1 709 62.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.1e-213 748.0 600 68.8
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.6e-209 734.2 696 60.1
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 1.1e-208 731.5 617 64.8
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.1e-203 712.6 1148 41.5
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.5e-183 646.4 596 60.6
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.9e-174 616.3 1149 37.9
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.1e-172 610.9 522 64.8
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 8.7e-163 578.9 454 68.1
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.3e-161 572.8 455 67.7
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.7e-153 548.1 430 68.4
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 5.5e-133 479.9 1511 28.9
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 4.4e-130 470.3 391 68.5
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 4.5e-127 460.3 406 65.8
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 4.6e-111 407.1 422 55.2
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.3e-94 351.7 355 58.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.5e-93 348.2 303 63.0
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.2e-90 339.3 485 47.8
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 5.8e-90 337.0 256 70.7
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.7e-87 328.2 396 49.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-85 322.4 1136 28.4
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-77 296.2 388 46.6
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 6.9e-75 287.0 262 59.2
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 2.1e-71 275.4 240 62.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.5e-64 250.8 202 67.3
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 8.7e-54 216.9 124 86.3
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-52 210.7 210 56.2
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.1e-51 208.0 208 56.2
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-50 204.9 224 52.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.6e-50 203.8 204 56.4
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.5e-48 198.7 183 55.7
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 9.3e-48 196.8 170 64.1
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.6e-47 194.5 181 59.7
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-46 190.7 174 63.2
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-41 174.1 133 73.7
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.2e-40 170.6 134 62.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-38 166.4 130 63.1
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.0e-37 162.5 130 62.3
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.0e-37 162.5 150 56.0
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.7e-29 134.4 112 61.6
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 2.2e-28 132.5 106 60.4
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-25 122.5 151 49.7
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.0e-25 121.3 107 66.4
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.5e-25 120.9 107 66.4
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-24 120.2 179 46.9
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.0e-22 112.1 234 38.0
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.8e-20 105.5 64 78.1
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.9e-17 95.5 69 66.7
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 4.7e-15 88.2 57 78.9
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 6.8e-14 84.3 87 56.3
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.2e-13 83.6 247 27.9
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.7e-13 81.3 113 48.7
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 6.3e-12 77.8 123 35.8
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 4.1e-11 75.1 133 44.4
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 7.0e-11 74.3 134 42.5
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-10 73.2 83 49.4
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 5.9e-10 71.2 69 62.3
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.3e-09 70.1 82 59.8
TAR636G1681 Trochodendron aralioides HOM05D000172 ORTHO05D000273 3.8e-09 68.6 51 70.6
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 5.0e-09 68.2 65 63.1
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 2.5e-08 65.9 65 61.5
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 2.5e-08 65.9 65 61.5
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 9.5e-08 63.9 64 60.9
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 1.2e-07 63.5 106 45.3


User provided reference genes

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