Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 2.0e-35 151.8 69 100.0
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 1.5e-19 99.0 69 68.1
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 2.5e-14 81.6 69 59.4
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 3.3e-14 81.3 68 58.8
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 9.6e-14 79.7 69 60.9
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 2.8e-13 78.2 70 55.7
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 4.8e-13 77.4 68 60.3
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 6.2e-13 77.0 62 58.1
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 1.1e-12 76.3 68 52.9
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.8e-12 75.5 69 53.6
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.8e-12 75.5 64 60.9
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 2.4e-12 75.1 64 59.4
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 4.0e-12 74.3 69 53.6
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 6.9e-12 73.6 69 53.6
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 6.9e-12 73.6 69 53.6
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 1.2e-11 72.8 68 54.4
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 1.2e-11 72.8 68 54.4
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.2e-11 72.8 62 54.8
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.5e-11 72.4 66 50.0
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 2.0e-11 72.0 64 56.2
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.0e-11 72.0 64 54.7
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.0e-11 72.0 69 52.2
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 3.4e-11 71.2 63 57.1
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 3.4e-11 71.2 57 56.1
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 4.5e-11 70.9 70 51.4
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 4.5e-11 70.9 61 54.1
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 7.6e-11 70.1 68 52.9
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 7.6e-11 70.1 61 60.7
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 7.6e-11 70.1 62 53.2
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 7.6e-11 70.1 64 56.2
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 7.6e-11 70.1 67 52.2
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 9.9e-11 69.7 55 58.2
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 9.9e-11 69.7 62 56.5
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 1.3e-10 69.3 65 52.3
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 1.3e-10 69.3 64 56.2
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 1.3e-10 69.3 63 47.6
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 1.7e-10 68.9 68 52.9
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.7e-10 68.9 61 60.7
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.7e-10 68.9 61 60.7
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 2.2e-10 68.6 65 53.8
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 2.2e-10 68.6 57 56.1
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 2.2e-10 68.6 68 48.5
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.2e-10 68.6 68 54.4
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 2.9e-10 68.2 62 53.2
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 2.9e-10 68.2 64 54.7
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 3.8e-10 67.8 63 49.2
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 4.9e-10 67.4 62 54.8
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 6.4e-10 67.0 65 50.8
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 6.4e-10 67.0 65 50.8
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 6.4e-10 67.0 69 49.3
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 8.4e-10 66.6 64 54.7
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 8.4e-10 66.6 62 53.2
COL.COLO4_15084 Corchorus olitorius HOM05D022458 ORTHO05D025182 1.1e-09 66.2 64 53.1
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 1.4e-09 65.9 65 55.4
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 1.4e-09 65.9 65 55.4
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 1.4e-09 65.9 66 51.5
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.4e-09 65.9 62 51.6
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 1.4e-09 65.9 59 52.5
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 1.4e-09 65.9 63 52.4
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 1.9e-09 65.5 54 53.7
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 2.4e-09 65.1 65 53.8
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 2.4e-09 65.1 65 53.8
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 3.2e-09 64.7 67 47.8
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 3.2e-09 64.7 67 47.8
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.2e-09 64.7 64 51.6
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.2e-09 64.7 64 48.4
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 4.2e-09 64.3 64 53.1
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 5.4e-09 63.9 57 50.9
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 5.4e-09 63.9 57 50.9
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 5.4e-09 63.9 66 51.5
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 7.1e-09 63.5 65 53.8
Gohir.D04G122000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 7.1e-09 63.5 64 53.1
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 7.1e-09 63.5 66 51.5
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.1e-09 63.5 48 62.5
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 9.3e-09 63.2 68 45.6
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 9.3e-09 63.2 63 50.8
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.2e-08 62.8 58 55.2
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.2e-08 62.8 58 55.2
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.2e-08 62.8 69 49.3
Gohir.A04G083300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.1e-08 62.0 64 53.1
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 2.1e-08 62.0 64 53.1
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 2.7e-08 61.6 67 46.3
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 3.5e-08 61.2 58 51.7
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 3.5e-08 61.2 59 52.5
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 4.6e-08 60.8 64 51.6
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 4.6e-08 60.8 64 51.6
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 4.6e-08 60.8 68 50.0
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 6.0e-08 60.5 65 49.2
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 1.3e-07 59.3 68 47.1
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 1.3e-07 59.3 64 46.9
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.3e-07 59.3 62 51.6
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.3e-07 59.3 69 49.3
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 1.8e-07 58.9 70 45.7
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 1.8e-07 58.9 70 45.7
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.3e-07 58.5 64 48.4
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 2.3e-07 58.5 64 46.9
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 2.3e-07 58.5 67 41.8
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 3.0e-07 58.2 64 51.6
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 3.0e-07 58.2 61 50.8
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 3.0e-07 58.2 75 44.0
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 3.9e-07 57.8 72 44.4
Ah.16g102460 Amaranthus hybridus HOM05D004372 ORTHO05D004331 8.7e-07 56.6 53 50.9
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 8.7e-07 56.6 65 43.1
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 8.7e-07 56.6 59 45.8
Cpa.g.sc33.8 Carica papaya HOM05D002383 ORTHO05D002515 1.1e-06 56.2 54 50.0
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 1.1e-06 56.2 52 51.9
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 1.1e-06 56.2 68 47.1
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 1.9e-06 55.5 72 45.8
EL10Ac7g16049 Beta vulgaris HOM05D004372 ORTHO05D004331 2.5e-06 55.1 67 43.3
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 3.3e-06 54.7 68 47.1
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 3.3e-06 54.7 64 46.9
Solyc02g086450.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 3.3e-06 54.7 53 49.1
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 4.3e-06 54.3 62 38.7
Actinidia05322 Actinidia chinensis HOM05D004372 ORTHO05D004331 5.6e-06 53.9 55 47.3
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 5.6e-06 53.9 67 38.8
AL8G23740 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 5.6e-06 53.9 59 44.1
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 5.6e-06 53.9 68 47.1
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 5.6e-06 53.9 51 49.0
FAN16G1658 Fragaria x ananassa HOM05D023252 ORTHO05D025479 7.4e-06 53.5 66 47.0
Peaxi162Scf00165g00075 Petunia axillaris HOM05D019299 ORTHO05D025949 7.4e-06 53.5 51 45.1
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 9.6e-06 53.1 61 41.0


User provided reference genes

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