Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 3.7e-41 171.0 80 100.0
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 5.3e-24 114.0 83 65.1
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 5.7e-18 94.0 70 60.0
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.7e-18 93.2 77 59.7
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.6e-15 85.1 70 57.1
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 3.8e-14 81.3 70 57.1
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 3.8e-14 81.3 70 57.1
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.8e-14 81.3 109 44.0
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 6.5e-14 80.5 74 51.4
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 2.5e-13 78.6 80 53.8
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 3.2e-13 78.2 80 51.2
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 3.2e-13 78.2 80 53.8
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 3.2e-13 78.2 73 54.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.5e-13 77.4 77 50.6
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.6e-12 75.9 81 49.4
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.1e-12 75.5 73 56.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.7e-12 74.3 76 50.0
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.1e-12 73.9 78 48.7
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.1e-12 73.9 78 48.7
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 6.1e-12 73.9 81 50.6
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 8.0e-12 73.6 73 49.3
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.0e-11 73.2 76 50.0
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.4e-11 72.8 70 48.6
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.8e-11 72.4 83 44.6
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.8e-11 72.4 73 53.4
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.3e-11 72.0 79 39.2
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.3e-11 72.0 72 52.8
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.3e-11 72.0 74 45.9
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 3.0e-11 71.6 84 45.2
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 4.0e-11 71.2 74 45.9
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.2e-11 70.9 80 46.2
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 5.2e-11 70.9 73 47.9
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 8.8e-11 70.1 72 51.4
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 8.8e-11 70.1 78 43.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 8.8e-11 70.1 76 47.4
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.1e-10 69.7 81 46.9
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.5e-10 69.3 71 46.5
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 2.0e-10 68.9 54 57.4
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.0e-10 68.9 73 50.7
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 2.0e-10 68.9 75 49.3
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.6e-10 68.6 54 57.4
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.3e-10 68.2 54 55.6
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.3e-10 68.2 54 55.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.3e-10 68.2 78 46.2
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.3e-10 68.2 70 47.1
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 3.3e-10 68.2 82 43.9
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.7e-10 67.4 83 45.8
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 5.7e-10 67.4 73 45.2
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.5e-10 67.0 81 43.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 7.5e-10 67.0 81 44.4
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 9.7e-10 66.6 70 45.7
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 9.7e-10 66.6 84 44.0
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 9.7e-10 66.6 84 44.0
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.3e-09 66.2 76 46.1
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.3e-09 66.2 68 44.1
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.7e-09 65.9 70 45.7
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 82 40.2
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 82 40.2
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.7e-09 65.9 82 40.2
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.7e-09 65.9 76 46.1
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.2e-09 65.5 81 45.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.2e-09 65.5 43 58.1
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.2e-09 65.5 70 44.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.2e-09 65.5 76 44.7
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.2e-09 65.5 82 42.7
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.2e-09 65.5 35 68.6
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.2e-09 65.5 79 45.6
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.8e-09 65.1 76 44.7
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.8e-09 64.3 82 45.1
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 4.8e-09 64.3 68 44.1
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 4.8e-09 64.3 72 47.2
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 6.3e-09 63.9 78 43.6
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.3e-09 63.9 74 41.9
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 8.2e-09 63.5 78 43.6
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.2e-09 63.5 72 40.3
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.2e-09 63.5 78 39.7
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.2e-09 63.5 80 43.8
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-08 63.2 81 45.7
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 74 41.9
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.1e-08 63.2 42 57.1
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.1e-08 63.2 82 41.5
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.8e-08 62.4 76 39.5
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.8e-08 62.4 81 42.0
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.8e-08 62.4 79 46.8
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 2.4e-08 62.0 84 40.5
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.4e-08 62.0 74 41.9
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 2.4e-08 62.0 42 57.1
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 2.4e-08 62.0 54 50.0
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.1e-08 61.2 50 50.0
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 5.3e-08 60.8 74 41.9
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.3e-08 60.8 51 54.9
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 5.3e-08 60.8 50 50.0
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 5.3e-08 60.8 58 51.7
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.0e-08 60.5 75 41.3
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 7.0e-08 60.5 78 37.2
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 7.0e-08 60.5 78 37.2
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.2e-07 59.7 52 51.9
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.2e-07 59.7 41 56.1
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.2e-07 59.7 53 56.6
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 1.6e-07 59.3 72 38.9
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.0e-07 58.9 81 39.5
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.0e-07 58.9 59 49.2
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 2.7e-07 58.5 54 50.0
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 3.5e-07 58.2 35 62.9
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 5.9e-07 57.4 80 40.0
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 7.7e-07 57.0 73 46.6
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.0e-06 56.6 39 48.7
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-06 56.6 37 62.2
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 1.3e-06 56.2 38 57.9
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 1.3e-06 56.2 38 57.9
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.3e-06 56.2 57 52.6
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.7e-06 55.8 79 45.6
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.7e-06 55.8 49 53.1
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 5.0e-06 54.3 39 56.4
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 5.0e-06 54.3 52 48.1
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 8.5e-06 53.5 43 55.8


User provided reference genes

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