Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 5.5e-113 411.0 211 100.0
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 2.3e-87 325.9 191 89.5
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 7.9e-59 231.1 199 63.8
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 4.3e-41 172.2 228 48.2
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 1.6e-19 100.5 76 61.8
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 1.8e-18 97.1 67 67.2
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 7.5e-17 91.7 219 32.0
COL.COLO4_25628 Corchorus olitorius HOM05D006281 ORTHO05D005138 9.7e-17 91.3 206 34.5
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 4.8e-16 89.0 227 31.7
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 8.2e-16 88.2 205 34.6
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 2.4e-15 86.7 209 33.5
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 3.1e-15 86.3 211 31.8
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 4.1e-15 85.9 217 32.3
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 9.1e-15 84.7 213 31.0
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.2e-14 84.3 187 32.6
Lsat_1_v5_gn_8_31300 Lactuca sativa HOM05D006281 ORTHO05D005138 2.0e-14 83.6 193 32.6
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 2.6e-14 83.2 62 66.1
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 3.5e-14 82.8 209 33.0
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 1.3e-13 80.9 81 54.3
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 2.2e-13 80.1 79 53.2
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 2.2e-13 80.1 192 33.3
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 2.9e-13 79.7 61 63.9
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 2.9e-13 79.7 190 31.6
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 2.9e-13 79.7 162 34.0
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 2.9e-13 79.7 211 28.9
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 3.8e-13 79.3 61 63.9
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 6.5e-13 78.6 73 53.4
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 1.1e-12 77.8 194 30.9
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 1.1e-12 77.8 61 60.7
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 1.5e-12 77.4 225 29.8
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 1.9e-12 77.0 143 37.8
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 3.2e-12 76.3 204 30.9
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.2e-12 76.3 195 30.3
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 3.2e-12 76.3 61 59.0
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 4.2e-12 75.9 70 51.4
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 4.2e-12 75.9 199 33.2
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 4.2e-12 75.9 190 30.0
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 5.5e-12 75.5 196 29.6
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 5.5e-12 75.5 66 53.0
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 5.5e-12 75.5 214 31.3
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 7.2e-12 75.1 185 30.8
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 7.2e-12 75.1 205 31.2
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 9.4e-12 74.7 64 53.1
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 1.6e-11 73.9 230 30.0
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 1.6e-11 73.9 80 50.0
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.6e-11 73.9 197 31.0
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 1.6e-11 73.9 63 54.0
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 2.7e-11 73.2 210 33.3
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 2.7e-11 73.2 89 43.8
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 2.7e-11 73.2 89 43.8
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 2.7e-11 73.2 82 45.1
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 3.6e-11 72.8 202 32.2
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.6e-11 72.8 184 27.2
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 3.6e-11 72.8 72 52.8
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 4.7e-11 72.4 83 42.2
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 4.7e-11 72.4 73 46.6
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 8.0e-11 71.6 218 28.4
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 8.0e-11 71.6 70 50.0
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 1.0e-10 71.2 60 55.0
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.0e-10 71.2 133 42.1
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 1.0e-10 71.2 68 47.1
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 1.0e-10 71.2 60 58.3
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 1.4e-10 70.9 136 34.6
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 1.4e-10 70.9 79 49.4
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 1.8e-10 70.5 82 48.8
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 1.8e-10 70.5 208 29.3
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 2.3e-10 70.1 57 59.6
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 2.3e-10 70.1 132 36.4
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 2.3e-10 70.1 191 29.3
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 3.0e-10 69.7 200 33.5
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 3.0e-10 69.7 60 53.3
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.0e-10 69.7 59 54.2
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 4.0e-10 69.3 209 30.1
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 4.0e-10 69.3 55 56.4
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 5.2e-10 68.9 136 32.4
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 6.8e-10 68.6 190 32.6
Hund20200 Selenicereus undatus HOM05D006281 ORTHO05D005138 6.8e-10 68.6 73 54.8
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 8.8e-10 68.2 195 31.8
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 8.8e-10 68.2 201 31.3
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 1.2e-09 67.8 195 30.8
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 1.2e-09 67.8 225 29.8
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 1.2e-09 67.8 63 57.1
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 1.5e-09 67.4 61 59.0
DCAR_024837 Daucus carota HOM05D006281 ORTHO05D005138 2.0e-09 67.0 75 45.3
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 2.0e-09 67.0 265 25.3
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 2.6e-09 66.6 207 28.0
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.6e-09 66.6 59 50.8
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 3.4e-09 66.2 184 29.9
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea HOM05D006281 ORTHO05D005138 4.4e-09 65.9 231 27.7
Nitab4.5_0000802g0120 Nicotiana tabacum HOM05D006281 ORTHO05D005138 4.4e-09 65.9 143 34.3
PSO339G3794 Papaver somniferum HOM05D006281 ORTHO05D005138 4.4e-09 65.9 58 56.9
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 4.4e-09 65.9 192 28.6
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 5.7e-09 65.5 191 32.5
Glyma.06G220600 Glycine max HOM05D006281 ORTHO05D005138 5.7e-09 65.5 53 54.7
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 7.5e-09 65.1 90 38.9
PSO832G0699 Papaver somniferum HOM05D002788 ORTHO05D005138 9.8e-09 64.7 171 33.3
PSO384G4516 Papaver somniferum HOM05D006281 ORTHO05D005138 1.3e-08 64.3 63 52.4
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 1.3e-08 64.3 77 41.6
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.7e-08 63.9 207 30.9
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 1.7e-08 63.9 231 28.1
Glyma.18G211600 Glycine max HOM05D006281 ORTHO05D005138 1.7e-08 63.9 65 47.7
Nitab4.5_0005628g0030 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.7e-08 63.9 130 34.6
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 2.8e-08 63.2 59 57.6
arahy.Tifrunner.gnm1.ann1.ZTR0B0 Arachis hypogaea HOM05D006281 ORTHO05D005138 3.7e-08 62.8 231 25.5
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 3.7e-08 62.8 77 40.3
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 3.7e-08 62.8 165 29.1
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 4.8e-08 62.4 86 45.3
PSO013G0071 Papaver somniferum HOM05D002788 ORTHO05D005138 4.8e-08 62.4 119 38.7
GSVIVG01032854001 Vitis vinifera HOM05D043099 ORTHO05D005138 4.8e-08 62.4 251 25.5
Os09g0114700 Oryza sativa ssp. japonica HOM05D006281 ORTHO05D005138 6.3e-08 62.0 62 48.4
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 8.3e-08 61.6 194 29.9
PSO384G0199 Papaver somniferum HOM05D006281 ORTHO05D005138 8.3e-08 61.6 64 51.6
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 8.3e-08 61.6 72 44.4
SEGI_11125 Sequoiadendron giganteum HOM05D006281 ORTHO05D005138 8.3e-08 61.6 57 47.4
Zm00001eb050110 Zea mays HOM05D006281 ORTHO05D005138 8.3e-08 61.6 192 28.1
QL08p063018 Quercus lobata HOM05D006281 ORTHO05D005138 1.4e-07 60.8 47 57.4
DCAR_027547 Daucus carota HOM05D000021 ORTHO05D035016 2.4e-07 60.1 61 44.3
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 2.4e-07 60.1 190 28.4
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 2.4e-07 60.1 201 30.8
Thhalv10017194m.g Eutrema salsugineum HOM05D010943 ORTHO05D005138 3.1e-07 59.7 72 40.3
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.1e-07 59.7 195 27.7
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 4.1e-07 59.3 95 35.8
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 4.1e-07 59.3 53 50.9
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 4.1e-07 59.3 77 40.3
PSO339G5625 Papaver somniferum HOM05D006281 ORTHO05D005138 5.4e-07 58.9 63 49.2
DCAR_027546 Daucus carota HOM05D000021 ORTHO05D035016 7.0e-07 58.5 60 43.3
DCAR_032142 Daucus carota HOM05D006281 ORTHO05D005138 7.0e-07 58.5 113 35.4
Actinidia13926 Actinidia chinensis HOM05D006281 ORTHO05D005138 9.1e-07 58.2 56 50.0
BcaB01g03596 Brassica carinata HOM05D010943 ORTHO05D005138 9.1e-07 58.2 71 40.8
BcaC01g05445 Brassica carinata HOM05D010943 ORTHO05D005138 9.1e-07 58.2 64 45.3
C03p26630 Brassica napus HOM05D010943 ORTHO05D005138 9.1e-07 58.2 64 45.3
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 9.1e-07 58.2 187 31.0
Nitab4.5_0000845g0130 Nicotiana tabacum HOM05D000728 ORTHO05D001586 9.1e-07 58.2 153 28.1
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 1.2e-06 57.8 95 35.8
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 1.2e-06 57.8 60 48.3
unitig_0.g237 Utricularia gibba HOM05D062541 ORTHO05D005138 1.2e-06 57.8 85 38.8
HPP92_025830 Vanilla planifolia HOM05D000728 ORTHO05D001586 1.2e-06 57.8 76 39.5
A03p22480 Brassica napus HOM05D010943 ORTHO05D005138 2.0e-06 57.0 60 46.7
BolC3t15048H Brassica oleracea HOM05D010943 ORTHO05D005138 2.0e-06 57.0 60 46.7
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 2.0e-06 57.0 84 35.7
Medtr1g069570 Medicago truncatula HOM05D000728 ORTHO05D001586 2.0e-06 57.0 138 31.9
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 4.5e-06 55.8 70 41.4
BraA03t11475Z Brassica rapa HOM05D010943 ORTHO05D005138 4.5e-06 55.8 58 46.6
CAN.G220.78 Capsicum annuum HOM05D000728 ORTHO05D001586 4.5e-06 55.8 77 36.4
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 5.9e-06 55.5 95 35.8
CiPaw.16G099400 Carya illinoinensis HOM05D006281 ORTHO05D005138 7.7e-06 55.1 183 26.2
Cc03_g06230 Coffea canephora HOM05D000728 ORTHO05D001586 7.7e-06 55.1 74 37.8


User provided reference genes

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