Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 0.0e+00 1352.8 660 100.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-217 760.4 663 58.4
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.8e-216 755.4 557 66.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.9e-208 729.2 560 64.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.2e-199 698.7 565 61.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.9e-196 689.9 557 60.9
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.1e-195 686.4 556 60.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.8e-195 685.3 555 61.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.8e-195 685.3 555 60.5
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 4.8e-195 685.3 560 61.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.1e-194 684.1 555 60.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 3.4e-193 679.1 560 60.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 8.4e-192 674.5 555 60.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-191 674.1 556 61.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.1e-191 674.1 554 59.6
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.4e-191 672.9 555 60.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.3e-189 666.4 556 59.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.1e-188 664.1 562 59.6
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.8e-187 659.4 556 60.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 6.2e-187 658.3 556 59.7
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 6.2e-187 658.3 555 59.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.9e-186 654.8 569 58.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.2e-185 654.1 562 57.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 9.3e-183 644.4 560 58.6
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-182 644.0 560 58.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.6e-182 642.1 570 57.9
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-181 641.0 560 58.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.8e-181 640.2 562 57.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-181 640.2 570 57.4
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.3e-181 639.8 596 55.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.7e-181 638.3 569 58.0
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.7e-180 635.2 556 57.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.4e-180 634.8 564 56.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.3e-179 634.0 557 56.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.3e-179 634.0 557 57.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.7e-179 632.5 562 55.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.5e-177 627.1 558 56.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.6e-177 626.3 596 55.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.6e-177 624.8 556 57.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 7.6e-177 624.8 555 57.1
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.2e-176 623.2 555 57.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.1e-175 620.9 558 55.2
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.1e-175 620.9 556 57.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.4e-175 620.5 555 57.1
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.4e-175 620.5 560 55.9
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.4e-175 620.5 555 55.9
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.9e-175 620.2 572 55.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-175 619.8 580 56.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.7e-174 616.3 596 54.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.0e-173 614.4 557 56.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 3.0e-173 612.8 553 55.9
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 8.7e-173 611.3 556 57.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 8.7e-173 611.3 638 50.3
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.5e-172 610.5 560 55.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.5e-172 610.5 563 55.4
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.9e-172 610.1 563 55.6
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.5e-172 609.8 558 56.3
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.3e-172 609.0 556 56.8
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.6e-171 607.1 557 56.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.2e-171 606.7 562 54.3
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.8e-171 606.3 563 54.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.7e-171 605.9 557 55.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 8.2e-171 604.7 568 53.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.4e-170 603.2 562 55.0
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.4e-170 603.2 563 54.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-169 600.5 556 55.4
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.9e-168 596.3 561 53.5
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.9e-168 596.3 720 47.6
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.1e-167 594.3 663 48.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 3.2e-167 592.8 556 55.9
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.1e-166 590.1 583 53.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 7.9e-166 588.2 556 54.0
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.5e-164 583.9 566 53.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.5e-164 583.9 558 53.6
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.7e-164 582.0 562 54.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.4e-164 581.6 570 53.7
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.8e-162 577.0 565 52.9
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.4e-161 572.8 562 52.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.9e-161 572.0 560 50.7
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.9e-160 569.7 560 50.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.1e-159 567.8 556 52.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.1e-159 567.8 556 52.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-159 566.6 612 51.0
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 9.4e-159 564.7 560 52.1
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.1e-156 557.8 563 49.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.3e-155 554.3 559 53.5
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-155 554.3 562 51.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.4e-154 550.8 555 52.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-153 547.0 559 53.0
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 5.0e-152 542.3 563 52.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.0e-149 534.6 556 48.9
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.3e-148 529.6 560 47.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.3e-148 529.6 553 50.1
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.3e-147 527.7 568 48.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.2e-147 525.0 557 47.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.1e-146 522.7 559 49.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-145 521.2 557 46.7
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.7e-144 517.3 560 47.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.0e-144 515.8 560 47.1
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-143 514.6 561 47.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 9.4e-143 511.5 558 47.0
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.0e-141 506.1 558 46.8
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.8e-141 505.4 590 46.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.8e-141 505.4 560 46.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 8.8e-141 505.0 566 47.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.5e-140 504.2 566 46.5
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.7e-140 502.3 575 46.1
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.3e-139 501.1 561 46.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-139 500.7 563 47.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.3e-139 498.8 554 46.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 8.3e-139 498.4 561 45.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 8.3e-139 498.4 561 45.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.8e-138 497.3 564 46.1
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-137 493.8 549 49.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-137 493.4 593 45.2
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.7e-136 490.7 558 46.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.1e-135 488.0 563 46.0
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.3e-135 486.5 567 48.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.2e-135 486.1 561 44.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.5e-135 485.7 563 45.8
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 9.5e-135 485.0 582 45.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.1e-134 483.8 562 43.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.8e-133 478.8 561 44.6
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.9e-131 472.6 556 46.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.6e-129 467.6 532 47.0
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.0e-128 462.6 587 41.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.5e-127 460.3 561 44.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-120 438.0 561 43.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 9.5e-119 431.8 567 42.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.5e-116 424.5 595 39.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.2e-113 414.8 447 49.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.6e-111 406.0 458 47.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.7e-99 367.9 509 41.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 5.4e-98 362.8 561 38.3
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.4e-93 348.2 555 39.5
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.0e-92 344.4 241 65.6
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 6.2e-86 322.8 562 34.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.1e-85 322.0 175 81.7
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 5.6e-79 299.7 376 44.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.6e-76 290.8 556 32.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 5.5e-74 283.1 573 32.8
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 7.6e-68 262.7 267 49.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.1e-61 240.4 166 64.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.5e-58 229.9 292 46.6
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 3.7e-54 217.2 291 40.5
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.9e-48 197.2 220 47.3
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.9e-44 183.3 254 41.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-43 180.6 113 70.8
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.1e-42 179.1 200 43.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-41 175.6 109 72.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 6.7e-40 169.9 224 45.5
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-30 138.7 153 45.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.3e-30 136.3 245 35.1
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.1e-26 125.9 324 30.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.5e-26 124.8 297 30.3
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.6e-25 122.1 282 32.3
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.0e-23 115.2 244 32.4
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.6e-23 114.8 299 27.4
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 9.1e-21 106.3 191 33.5
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.5e-20 104.0 175 37.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.3e-18 97.8 60 70.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-17 95.5 95 49.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-12 77.4 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-12 77.4 48 66.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-11 75.5 46 69.6


User provided reference genes

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