Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 5.7e-68 260.8 130 100.0
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 5.4e-26 121.3 121 57.0
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 5.1e-24 114.8 129 51.2
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 3.3e-23 112.1 107 59.8
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 4.3e-23 111.7 152 48.7
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.1e-22 109.4 118 52.5
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 2.1e-22 109.4 118 52.5
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 1.4e-21 106.7 114 56.1
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 2.4e-21 105.9 142 49.3
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 3.1e-21 105.5 110 57.3
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 5.2e-21 104.8 109 55.0
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 6.8e-21 104.4 87 62.1
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 8.9e-21 104.0 105 53.3
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 8.9e-21 104.0 68 70.6
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 9.9e-20 100.5 67 74.6
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 1.7e-19 99.8 136 48.5
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 1.7e-19 99.8 129 49.6
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 2.2e-19 99.4 102 52.9
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 2.2e-19 99.4 94 58.5
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 2.9e-19 99.0 59 79.7
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 2.9e-19 99.0 80 65.0
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 3.8e-19 98.6 68 69.1
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 3.8e-19 98.6 114 52.6
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 1.1e-18 97.1 75 68.0
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 1.4e-18 96.7 95 61.1
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 1.9e-18 96.3 67 73.1
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 2.4e-18 95.9 110 51.8
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 2.4e-18 95.9 76 61.8
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 3.2e-18 95.5 79 64.6
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 3.2e-18 95.5 95 57.9
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 3.2e-18 95.5 121 50.4
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 5.4e-18 94.7 85 57.6
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 7.1e-18 94.4 64 71.9
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 7.1e-18 94.4 84 58.3
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 9.2e-18 94.0 85 57.6
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 9.2e-18 94.0 102 51.0
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 1.6e-17 93.2 149 43.0
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 1.6e-17 93.2 74 66.2
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 2.1e-17 92.8 83 59.0
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 3.5e-17 92.0 74 59.5
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 3.5e-17 92.0 77 62.3
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 6.0e-17 91.3 66 71.2
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 7.8e-17 90.9 138 39.1
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 1.0e-16 90.5 76 61.8
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 1.0e-16 90.5 89 57.3
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 1.3e-16 90.1 80 57.5
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 1.3e-16 90.1 161 41.0
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 2.3e-16 89.4 133 44.4
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 2.3e-16 89.4 81 61.7
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 5.1e-16 88.2 64 68.8
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 6.6e-16 87.8 64 64.1
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 8.7e-16 87.4 108 46.3
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 8.7e-16 87.4 107 49.5
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 8.7e-16 87.4 57 71.9
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 1.1e-15 87.0 81 56.8
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.1e-15 87.0 60 68.3
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 1.5e-15 86.7 91 54.9
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 1.9e-15 86.3 60 70.0
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 2.5e-15 85.9 64 67.2
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 4.3e-15 85.1 60 66.7
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 4.3e-15 85.1 93 51.6
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 4.3e-15 85.1 97 49.5
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 5.6e-15 84.7 134 40.3
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 9.6e-15 84.0 62 66.1
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 1.3e-14 83.6 118 44.1
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 2.8e-14 82.4 104 47.1
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 2.8e-14 82.4 102 47.1
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 3.6e-14 82.0 61 63.9
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 6.2e-14 81.3 72 63.9
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 8.1e-14 80.9 103 46.6
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 1.8e-13 79.7 66 60.6
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 1.8e-13 79.7 47 76.6
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 1.8e-13 79.7 101 46.5
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 1.8e-13 79.7 66 62.1
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 2.4e-13 79.3 84 54.8
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 6.9e-13 77.8 105 45.7
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 9.0e-13 77.4 61 63.9
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 9.0e-13 77.4 61 63.9
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 2.0e-12 76.3 60 65.0
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 3.4e-12 75.5 48 70.8
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 4.4e-12 75.1 106 42.5
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 5.8e-12 74.7 90 46.7
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 9.9e-12 73.9 65 58.5
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 2.4e-10 69.3 77 50.6
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 1.0e-08 63.9 50 64.0
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 6.6e-08 61.2 41 70.7
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 6.6e-08 61.2 44 68.2
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 2.5e-07 59.3 53 52.8
C02p02220 Brassica napus HOM05D007683 ORTHO05D009703 7.3e-07 57.8 32 81.2
Os03g0334300 Oryza sativa ssp. japonica HOM05D007683 ORTHO05D009703 7.3e-07 57.8 43 67.4
Aqoxy4G03276 Aquilegia oxysepala HOM05D007683 ORTHO05D009703 9.6e-07 57.4 34 76.5
BcaC03g13152 Brassica carinata HOM05D007683 ORTHO05D009703 2.1e-06 56.2 31 80.6
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 2.1e-06 56.2 42 61.9
HanXRQChr14g0460581 Helianthus annuus HOM05D007683 ORTHO05D009703 2.1e-06 56.2 112 38.4


User provided reference genes

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