Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.2e-150 535.0 262 100.0
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.8e-44 183.7 281 40.9
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 9.8e-43 177.9 263 39.9
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.9e-39 166.0 223 47.5
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.9e-39 166.0 237 43.0
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.3e-38 162.9 276 38.8
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 4.7e-37 159.1 246 40.2
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.1e-36 157.9 247 37.7
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 1.4e-33 147.5 217 40.1
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.9e-33 147.1 248 38.7
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.4e-33 146.7 240 39.6
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 9.2e-33 144.8 268 36.2
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.0e-31 141.4 195 44.1
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 1.0e-31 141.4 289 35.3
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 6.6e-31 138.7 222 35.6
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 2.5e-30 136.7 200 39.5
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 3.3e-30 136.3 246 36.2
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.3e-30 136.0 235 40.0
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.6e-30 135.6 221 38.0
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.6e-30 135.6 221 38.0
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 9.5e-30 134.8 223 35.9
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.2e-29 134.4 222 36.9
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.6e-29 134.0 224 36.2
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 2.1e-29 133.7 217 35.5
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.1e-29 133.7 178 42.7
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 3.6e-29 132.9 260 35.0
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.6e-29 132.9 213 37.1
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.1e-29 131.7 221 38.0
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 8.1e-29 131.7 254 37.0
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.1e-28 131.3 208 39.4
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 4.0e-28 129.4 221 38.0
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.9e-28 128.3 222 35.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.2e-27 127.9 219 36.1
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-27 127.9 233 37.8
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.5e-27 127.5 222 35.6
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.5e-27 127.5 222 35.6
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 7.6e-27 125.2 287 34.5
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.3e-26 124.4 284 32.0
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.2e-26 123.6 149 46.3
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 4.9e-26 122.5 215 35.8
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.9e-26 122.5 214 35.5
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-25 121.3 231 35.1
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-25 121.3 231 35.1
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-25 121.3 231 35.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.1e-25 121.3 220 35.0
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.9e-25 120.6 259 31.7
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.9e-25 120.6 213 34.3
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 3.2e-25 119.8 219 37.0
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 4.1e-25 119.4 215 34.9
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 5.4e-25 119.0 212 34.9
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.4e-25 119.0 223 34.5
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 5.4e-25 119.0 212 34.9
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.2e-24 117.9 224 37.9
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.7e-24 116.7 208 34.6
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 3.5e-24 116.3 200 33.5
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 3.5e-24 116.3 222 36.5
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 3.5e-24 116.3 212 34.4
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 4.6e-24 115.9 223 34.1
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 4.6e-24 115.9 223 33.6
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.0e-23 114.8 213 33.8
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-23 114.4 248 33.5
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.3e-23 114.4 327 30.3
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.3e-23 114.4 234 32.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.7e-23 114.0 220 34.5
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.7e-23 114.0 220 34.5
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 3.0e-23 113.2 209 33.5
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 3.0e-23 113.2 233 32.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 3.9e-23 112.8 217 34.6
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 5.1e-23 112.5 229 33.6
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 6.6e-23 112.1 221 34.8
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.6e-23 112.1 252 32.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 6.6e-23 112.1 209 34.9
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.5e-22 110.9 219 33.8
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.3e-22 109.8 254 32.7
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.3e-22 109.8 250 34.4
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.3e-22 109.4 250 33.6
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 5.6e-22 109.0 187 36.4
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 5.6e-22 109.0 245 34.3
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.3e-22 108.6 187 38.0
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.2e-21 107.8 237 34.2
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.2e-21 107.8 217 36.4
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 2.1e-21 107.1 224 35.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.6e-21 106.3 202 33.7
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.6e-21 106.3 250 33.2
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 4.7e-21 105.9 274 30.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.1e-20 104.8 224 32.6
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-20 104.4 189 36.5
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.8e-20 104.0 207 32.4
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.4e-20 103.6 206 35.0
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 3.1e-20 103.2 239 31.4
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 3.1e-20 103.2 238 32.8
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.1e-20 103.2 253 29.6
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 4.0e-20 102.8 221 32.1
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 4.0e-20 102.8 172 36.6
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 5.2e-20 102.4 177 36.7
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 8.9e-20 101.7 186 36.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 8.9e-20 101.7 144 40.3
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.2e-19 101.3 241 29.0
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 2.6e-19 100.1 211 32.7
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 3.4e-19 99.8 213 32.4
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.3e-18 97.8 220 30.9
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 2.9e-18 96.7 249 28.9
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.9e-18 96.7 256 31.2
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 2.9e-18 96.7 205 32.2
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.8e-18 96.3 235 30.2
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.9e-18 95.9 275 27.6
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.4e-17 94.4 196 34.7
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.1e-16 90.5 228 30.3
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 3.5e-16 89.7 222 32.4
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 4.6e-16 89.4 129 39.5
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 6.0e-16 89.0 166 33.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 7.8e-16 88.6 193 32.1
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.0e-15 88.2 205 31.7
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.0e-15 88.2 239 29.3
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.7e-15 87.4 226 32.3
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 5.1e-15 85.9 192 31.8
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.1e-15 85.9 211 30.3
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.1e-14 84.7 193 30.6
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.1e-14 84.7 195 33.3
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.9e-14 84.0 281 28.1
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 2.5e-14 83.6 113 41.6
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.5e-14 83.6 248 27.8
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 4.3e-14 82.8 243 29.2
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 4.3e-14 82.8 247 28.3
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 4.3e-14 82.8 202 31.7
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 5.6e-14 82.4 204 31.9
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 1.3e-13 81.3 215 29.8
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.8e-13 80.1 210 29.0
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 2.8e-13 80.1 186 31.2
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.6e-13 79.7 206 30.6
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 8.1e-13 78.6 244 29.1
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 8.1e-13 78.6 138 37.0
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.1e-12 78.2 202 31.7
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.4e-12 77.8 108 37.0
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.8e-12 77.4 83 47.0
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 3.1e-12 76.6 153 34.0
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 5.3e-12 75.9 236 28.8
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 6.9e-12 75.5 201 29.9
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.2e-11 74.7 196 30.6
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.2e-11 74.7 195 29.7
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.2e-11 74.7 196 31.1
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 1.5e-11 74.3 221 26.2
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 2.6e-11 73.6 200 28.5
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 2.6e-11 73.6 98 37.8
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.6e-11 73.6 223 27.8
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 3.4e-11 73.2 234 29.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 5.8e-11 72.4 240 25.8
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 9.9e-11 71.6 201 29.4
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 2.2e-10 70.5 271 25.5
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 3.8e-10 69.7 205 28.8
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 3.8e-10 69.7 217 24.4
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 6.4e-10 68.9 230 27.4
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 1.6e-08 64.3 228 25.0
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 3.9e-07 59.7 89 41.6
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 1.5e-06 57.8 203 29.6
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 7.3e-06 55.5 201 27.4


User provided reference genes

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