Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 8.3e-131 470.3 226 100.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.3e-87 325.1 236 68.6
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.1e-85 320.5 236 67.8
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.0e-52 209.9 223 54.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 8.7e-48 194.5 238 46.6
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 4.8e-46 188.7 251 44.2
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 6.9e-45 184.9 164 57.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-44 183.3 243 44.0
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-44 183.3 243 44.0
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 2.0e-44 183.3 176 55.1
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.0e-44 183.3 240 43.8
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.0e-44 183.3 217 47.5
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.6e-44 183.0 156 60.3
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 4.5e-44 182.2 193 52.3
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.2e-43 179.9 158 58.2
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 5.0e-43 178.7 188 54.8
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.1e-42 177.6 184 52.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 2.5e-42 176.4 148 60.8
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.5e-42 176.4 207 51.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.2e-42 175.6 164 54.9
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.2e-42 175.6 208 48.6
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.2e-42 175.6 241 42.7
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.5e-42 175.3 149 61.1
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 9.4e-42 174.5 179 53.6
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 9.4e-42 174.5 188 48.9
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.2e-41 174.1 179 51.4
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.2e-41 174.1 162 58.6
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.2e-41 174.1 211 49.8
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.6e-41 173.7 166 55.4
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.1e-41 173.3 152 54.6
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.1e-41 173.3 234 43.2
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 3.6e-41 172.6 172 51.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.6e-41 172.2 149 59.1
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 6.1e-41 171.8 187 51.9
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.9e-41 171.4 161 54.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 7.9e-41 171.4 199 51.3
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.9e-41 171.4 199 51.3
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 7.9e-41 171.4 161 56.5
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 7.9e-41 171.4 166 55.4
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.0e-40 171.0 181 53.0
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.0e-40 171.0 149 59.1
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.8e-40 170.2 175 52.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.3e-40 169.9 188 48.9
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.3e-40 169.9 187 50.8
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 3.0e-40 169.5 162 54.9
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 6.7e-40 168.3 210 47.6
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.3e-39 166.0 163 50.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.7e-39 165.2 183 51.4
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 7.4e-39 164.9 164 53.7
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 9.7e-39 164.5 146 54.1
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.7e-38 163.7 233 43.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.7e-38 163.7 158 53.8
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.2e-38 163.3 155 51.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.2e-38 163.3 155 51.0
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 2.8e-38 162.9 153 51.6
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 2.8e-38 162.9 153 51.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 2.8e-38 162.9 154 51.3
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.8e-38 162.9 162 53.7
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 2.8e-38 162.9 145 57.9
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.8e-38 162.9 204 46.1
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.2e-38 161.4 155 54.2
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-37 160.6 155 55.5
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.4e-37 160.6 155 55.5
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.4e-37 159.8 164 53.7
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 3.1e-37 159.5 149 54.4
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.1e-37 159.5 205 42.9
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.3e-37 158.7 197 45.2
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.9e-37 158.3 151 55.6
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.9e-37 158.3 224 42.9
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 9.1e-37 157.9 155 54.8
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 9.1e-37 157.9 155 54.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 9.1e-37 157.9 178 46.1
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 9.1e-37 157.9 154 53.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 9.1e-37 157.9 154 53.9
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.2e-36 157.5 159 52.2
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.5e-36 157.1 193 45.6
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.5e-36 157.1 153 54.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.5e-36 157.1 217 44.7
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.6e-36 156.4 154 51.3
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.6e-36 156.4 216 39.8
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.4e-36 156.0 173 47.4
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 4.5e-36 155.6 183 48.6
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-36 155.6 185 48.6
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.9e-36 155.2 235 41.7
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.0e-35 154.5 228 40.4
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.0e-35 154.5 167 50.9
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-35 154.1 171 49.7
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.7e-35 153.7 150 56.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 3.8e-35 152.5 174 48.3
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.8e-35 152.5 172 47.7
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.8e-35 152.5 163 52.1
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.5e-35 151.8 163 51.5
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.1e-34 151.0 155 51.0
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 3.2e-34 149.4 177 46.3
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 4.2e-34 149.1 157 51.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.2e-34 149.1 159 50.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.5e-34 148.7 151 51.7
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 9.4e-34 147.9 204 43.1
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-33 147.5 201 43.8
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.2e-33 147.5 201 43.8
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.6e-33 147.1 177 44.1
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.7e-33 146.4 201 43.3
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.7e-33 146.4 204 42.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 6.1e-33 145.2 205 42.4
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 7.9e-33 144.8 155 49.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.9e-32 142.5 206 41.7
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 6.7e-32 141.7 164 50.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 8.8e-32 141.4 169 45.0
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 4.4e-31 139.0 155 51.6
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.3e-30 137.5 182 41.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.3e-30 137.5 163 44.8
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.8e-30 136.3 153 50.3
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.4e-29 134.0 151 47.7
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.0e-28 130.2 166 45.2
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 2.6e-28 129.8 151 47.7
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.9e-28 128.6 149 45.0
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 7.7e-28 128.3 152 46.1
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.0e-27 127.9 137 50.4
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.0e-27 127.9 152 48.7
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-27 127.9 113 57.5
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.0e-27 127.9 167 43.7
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.0e-27 127.9 154 48.7
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-27 127.1 113 56.6
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.9e-27 126.3 130 52.3
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.0e-27 125.6 172 40.1
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 8.5e-27 124.8 185 41.1
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-26 123.6 177 42.9
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 4.2e-26 122.5 161 44.1
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 5.5e-26 122.1 180 42.2
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.6e-25 120.6 179 40.8
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.1e-25 120.2 182 40.7
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.7e-25 119.8 206 39.3
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.7e-25 119.0 166 41.6
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.0e-24 116.3 169 42.6
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-23 113.6 186 37.6
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.4e-23 112.5 192 37.0
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.4e-23 112.5 192 37.0
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 5.7e-23 112.1 117 53.8
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 7.5e-23 111.7 189 39.2
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 9.7e-23 111.3 177 35.0
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.7e-22 110.5 166 39.8
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.7e-22 110.5 186 37.1
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.7e-22 109.4 157 39.5
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 9.1e-21 104.8 146 40.4
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.9e-19 99.8 160 34.4
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.1e-18 97.8 149 38.3
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.2e-18 96.3 171 36.8
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.6e-17 94.0 107 48.6
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.6e-17 94.0 153 37.3
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.6e-17 92.8 159 36.5
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.0e-15 87.0 143 37.1
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 3.4e-15 86.3 64 62.5
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.4e-15 85.9 177 35.0
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.1e-13 81.3 183 35.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.8e-13 80.5 177 32.8
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.4e-13 80.1 202 29.7
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.7e-12 76.6 94 43.6
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.7e-12 76.6 162 34.6
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.2e-11 73.6 165 28.5
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 8.5e-11 71.6 71 59.2
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 7.2e-10 68.6 94 41.5
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 6.1e-09 65.5 101 37.6
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 8.0e-09 65.1 75 44.0
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.3e-08 63.5 146 32.2
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 8.3e-06 55.1 109 32.1


User provided reference genes

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