Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.0e-249 864.0 443 100.0
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.6e-231 805.8 441 93.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.6e-215 751.5 442 87.8
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 4.9e-212 741.1 442 86.2
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.4e-211 739.6 441 85.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.4e-211 738.8 441 87.1
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.2e-211 738.4 442 85.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 4.2e-211 738.0 441 85.5
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 5.4e-211 737.6 442 84.8
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.2e-210 736.5 443 86.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.6e-210 736.1 442 84.8
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.5e-210 734.9 445 86.5
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.7e-209 732.6 442 85.3
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.7e-209 732.6 447 85.2
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.0e-209 731.9 444 85.6
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 3.0e-209 731.9 445 85.8
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 8.7e-209 730.3 443 84.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.3e-208 727.2 441 84.1
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.6e-207 726.1 443 84.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.6e-207 726.1 445 84.9
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.8e-207 725.3 444 84.2
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.6e-207 724.9 442 85.1
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.8e-207 724.5 444 83.8
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.1e-206 723.4 441 84.6
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.4e-206 722.2 445 84.7
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.1e-206 721.8 441 82.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.1e-206 721.8 441 82.5
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-205 719.5 443 84.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.0e-205 719.2 441 83.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.5e-205 718.0 442 82.8
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 5.8e-205 717.6 441 83.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.8e-205 717.6 444 82.9
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.3e-204 716.5 441 83.0
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.3e-204 716.5 442 83.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.2e-204 715.7 441 83.7
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.2e-204 715.7 445 83.1
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 2.9e-204 715.3 440 82.5
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.4e-204 714.1 445 82.2
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 8.4e-204 713.8 441 82.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.4e-203 713.0 442 82.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.9e-203 712.6 442 83.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.4e-203 712.2 442 82.6
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.4e-203 711.1 441 82.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 7.1e-203 710.7 441 81.2
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 7.1e-203 710.7 443 82.6
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.2e-202 709.9 441 82.8
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-202 709.9 441 82.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.7e-202 708.8 445 82.2
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 6.0e-202 707.6 443 82.2
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.0e-201 706.8 443 81.5
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.8e-201 706.1 441 82.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.3e-201 705.7 443 82.4
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.3e-201 705.7 443 81.5
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.9e-201 704.9 441 81.0
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 3.9e-201 704.9 443 81.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 8.7e-201 703.7 442 82.1
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 8.7e-201 703.7 444 81.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 8.7e-201 703.7 441 82.5
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 2.5e-200 702.2 441 82.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 4.3e-200 701.4 441 81.4
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 5.6e-200 701.0 446 79.6
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.3e-199 699.9 445 80.4
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 4.8e-199 698.0 441 81.6
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 8.1e-199 697.2 445 80.9
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.4e-198 696.4 446 80.0
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.4e-198 695.7 445 79.3
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.4e-198 695.7 418 84.4
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.0e-198 694.9 439 81.3
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 4.0e-198 694.9 441 81.0
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 9.0e-198 693.7 441 81.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 9.0e-198 693.7 441 82.3
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.0e-197 692.6 441 82.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 7.6e-197 690.6 441 81.2
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.6e-197 690.6 441 81.2
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 9.9e-197 690.3 401 85.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.3e-196 689.9 401 85.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 80.8
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.1e-195 686.8 441 81.0
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.9e-195 686.0 441 79.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 441 79.6
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-194 682.2 441 80.3
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.7e-194 682.2 441 80.3
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 6.0e-194 681.0 432 80.6
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 8.7e-193 677.2 441 79.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 3.3e-192 675.2 441 80.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.3e-192 675.2 415 82.4
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 4.3e-192 674.9 441 79.8
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 4.3e-192 674.9 444 78.8
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 7.4e-192 674.1 414 83.3
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-191 672.9 441 78.5
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.6e-191 672.9 441 78.5
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.7e-191 671.8 396 85.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 6.2e-191 671.0 441 79.6
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 5.3e-190 667.9 442 79.2
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 6.9e-190 667.5 441 78.7
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.2e-189 666.8 443 78.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 2.0e-189 666.0 443 78.6
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.6e-189 665.6 377 87.5
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.5e-189 664.8 441 78.7
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 7.6e-189 664.1 441 77.1
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.3e-188 663.3 447 79.0
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-188 662.9 441 78.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.7e-188 662.9 441 78.0
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 3.8e-188 661.8 440 77.7
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 2.5e-187 659.1 439 77.9
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.8e-185 652.9 441 77.1
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.8e-185 652.9 441 77.1
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 3.9e-185 651.7 441 76.2
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.5e-184 649.8 384 83.6
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 7.4e-184 647.5 436 76.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.1e-182 641.7 421 77.7
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.4e-181 638.6 390 83.8
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.9e-181 637.9 483 70.4
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 7.7e-181 637.5 379 83.4
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.0e-180 637.1 396 80.1
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 442 76.7
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 3.8e-180 635.2 488 69.1
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 7.9e-178 627.5 396 79.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.1e-174 615.1 382 82.7
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 5.5e-171 604.7 441 73.0
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.2e-170 603.6 444 73.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-170 603.6 368 85.6
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.4e-161 573.5 392 77.3
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 6.1e-154 548.1 366 73.0
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.0e-153 547.4 365 79.5
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 5.2e-153 545.0 399 68.9
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 9.7e-152 540.8 305 89.2
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.8e-151 538.5 407 64.9
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.9e-147 526.6 363 70.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.2e-145 518.5 410 64.4
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.8e-145 518.1 410 64.4
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.6e-144 516.2 370 69.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.5e-144 514.6 361 68.7
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-143 513.8 401 65.3
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 6.3e-143 511.5 400 66.0
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-142 510.8 392 64.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 7.7e-141 504.6 366 65.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.9e-140 502.7 361 70.1
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.1e-138 496.5 364 67.6
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.2e-135 486.5 374 62.6
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 8.3e-135 484.6 317 79.2
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 8.6e-132 474.6 377 61.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 5.6e-131 471.9 359 64.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.4e-118 428.7 365 61.4
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 7.8e-101 371.7 366 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.2e-94 349.4 302 61.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.3e-83 312.8 215 73.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.5e-71 272.3 187 77.5
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.1e-69 267.3 342 43.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.7e-61 240.4 199 62.3
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-60 238.4 139 87.1
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-59 235.0 123 88.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 2.6e-56 223.8 160 69.4
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.8e-42 177.2 162 56.8
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 7.7e-40 169.1 119 71.4
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.7e-37 159.8 165 57.6
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 8.3e-34 149.1 81 90.1
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-30 138.7 80 85.0
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 6.1e-29 132.9 121 55.4
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.2e-26 124.4 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 6.1e-21 106.3 74 66.2
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 9.8e-19 99.0 51 86.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 8.6e-15 85.9 94 48.9
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.0e-07 62.4 35 82.9


User provided reference genes

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