Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.6e-214 749.2 402 100.0
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.7e-123 446.8 438 61.0
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.1e-80 302.8 440 45.2
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.0e-78 298.1 440 45.2
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 3.7e-73 279.6 437 44.9
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 3.4e-71 273.1 458 42.6
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.2e-69 266.2 439 42.6
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.6e-68 263.1 437 44.6
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 9.7e-66 255.0 431 43.2
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.2e-63 248.1 431 41.8
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 7.7e-63 245.4 435 43.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 2.9e-62 243.4 433 41.3
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 8.5e-62 241.9 428 40.7
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.9e-61 240.7 435 41.4
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 4.7e-60 236.1 437 40.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.4e-59 234.6 437 40.5
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 2.3e-59 233.8 425 40.5
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.4e-56 223.8 547 34.2
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.1e-56 223.4 434 37.3
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 9.1e-56 221.9 445 37.5
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.0e-55 220.7 432 37.3
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.3e-54 218.0 369 41.2
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.3e-54 218.0 438 40.9
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.4e-53 211.8 436 40.6
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 6.1e-52 209.1 434 38.7
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.4e-51 208.0 426 39.0
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.0e-51 206.8 439 40.8
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 8.8e-51 205.3 454 36.1
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 5.7e-50 202.6 435 37.5
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.8e-49 200.3 449 37.6
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.8e-49 200.3 441 38.5
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 4.8e-49 199.5 407 37.1
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 8.2e-49 198.7 428 35.3
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.4e-48 198.0 436 37.6
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.2e-47 194.9 435 36.3
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 4.5e-47 193.0 408 38.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 3.8e-46 189.9 451 36.4
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.5e-45 187.2 439 35.1
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.2e-45 186.8 445 36.0
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.5e-45 186.0 435 38.6
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 9.4e-45 185.3 427 34.9
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 9.4e-45 185.3 411 35.5
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.1e-44 184.1 427 36.5
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 3.6e-44 183.3 443 32.5
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 8.0e-44 182.2 452 35.6
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.8e-43 181.0 436 35.6
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 4.0e-43 179.9 443 36.1
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 6.8e-43 179.1 450 34.7
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 6.8e-43 179.1 420 35.7
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 8.8e-43 178.7 439 35.8
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.2e-42 178.3 448 35.7
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-42 177.9 420 37.1
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.5e-42 177.9 397 35.3
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.0e-42 177.6 452 34.1
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.0e-42 177.6 421 32.8
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 2.6e-42 177.2 404 34.9
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.4e-42 176.8 425 33.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.4e-42 176.8 420 36.9
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.4e-42 176.4 425 36.0
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 4.4e-42 176.4 439 33.7
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 9.8e-42 175.3 429 36.4
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.8e-41 173.7 422 34.8
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.8e-41 172.9 429 36.1
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.3e-41 172.6 432 34.3
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.8e-40 171.0 438 34.2
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.1e-40 170.2 431 33.6
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.2e-39 168.3 460 32.8
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.2e-39 168.3 439 34.2
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.0e-39 167.5 432 37.0
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 4.5e-39 166.4 422 32.9
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 5.9e-39 166.0 432 34.3
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.9e-39 166.0 451 34.6
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 7.7e-39 165.6 431 36.4
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 7.7e-39 165.6 442 33.5
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.0e-38 165.2 419 33.9
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 1.0e-38 165.2 451 35.5
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.7e-38 164.5 440 32.5
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 6.5e-38 162.5 429 33.3
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.2e-37 160.2 442 32.4
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 4.2e-37 159.8 349 36.1
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 4.2e-37 159.8 428 32.0
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.2e-37 159.8 417 32.9
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 5.5e-37 159.5 358 36.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 5.5e-37 159.5 454 31.9
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 7.2e-37 159.1 349 37.0
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.1e-36 157.5 421 34.2
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 2.1e-36 157.5 423 32.2
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.6e-36 156.8 446 34.8
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 8.0e-36 155.6 412 33.0
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.4e-35 154.8 407 32.7
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.4e-35 154.8 437 31.8
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.8e-35 154.5 439 32.8
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.8e-35 154.5 427 31.4
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 2.3e-35 154.1 459 29.6
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.0e-35 153.3 449 32.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 5.2e-35 152.9 426 31.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.8e-35 152.5 447 32.2
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 8.8e-35 152.1 482 32.2
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.2e-34 151.8 423 31.7
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 2.0e-34 151.0 441 33.3
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 3.4e-34 150.2 444 34.7
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.4e-34 149.8 435 33.6
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 7.5e-34 149.1 491 31.2
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.7e-33 147.9 426 34.7
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 2.2e-33 147.5 430 32.8
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-33 147.5 425 33.4
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 4.9e-33 146.4 434 35.0
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.3e-33 146.0 447 33.1
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.3e-33 145.6 429 32.6
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.1e-32 145.2 429 32.9
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.4e-32 144.8 445 34.4
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-32 144.8 410 34.6
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.8e-32 144.4 455 32.1
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 4.1e-32 143.3 443 34.3
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 9.2e-32 142.1 415 33.7
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 9.2e-32 142.1 445 30.6
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-31 141.7 426 33.3
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.0e-31 141.0 379 33.8
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 4.5e-31 139.8 439 30.1
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 5.9e-31 139.4 432 30.8
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 7.8e-31 139.0 384 32.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.0e-30 138.7 427 33.5
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.0e-30 138.7 442 32.4
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.3e-30 137.5 440 30.9
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.8e-30 136.7 486 28.6
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.8e-30 136.7 429 33.6
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.0e-30 136.3 427 31.4
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 5.0e-30 136.3 402 31.6
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 5.0e-30 136.3 436 31.2
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.5e-29 134.8 436 34.6
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.9e-29 134.4 416 31.2
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 7.3e-29 132.5 434 30.2
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 9.5e-29 132.1 429 32.2
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 9.5e-29 132.1 428 32.2
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 6.1e-28 129.4 465 29.9
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 8.0e-28 129.0 350 34.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.5e-26 124.8 328 33.5
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.0e-26 124.4 439 30.8
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 3.4e-26 123.6 188 43.6
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.4e-26 123.6 413 30.5
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 4.4e-26 123.2 425 32.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.7e-25 121.3 314 33.4
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 2.2e-25 120.9 455 32.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.9e-25 119.8 427 30.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 8.3e-25 119.0 413 30.3
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 7.0e-24 115.9 437 29.7
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 9.2e-24 115.5 441 29.5
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 9.2e-24 115.5 413 29.8
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 3.5e-23 113.6 218 39.9
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 4.6e-23 113.2 437 28.8
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 2.3e-22 110.9 444 30.6
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 8.6e-22 109.0 183 39.3
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.3e-21 107.1 302 37.1
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 6.2e-20 102.8 446 29.1
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.2e-20 102.8 419 30.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.0e-20 102.4 297 30.0
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 5.2e-19 99.8 273 33.0
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 8.9e-19 99.0 443 29.1
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.2e-18 98.6 403 27.0
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 7.5e-18 95.9 406 29.3
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.9e-16 91.3 442 29.0
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 7.0e-16 89.4 238 32.8
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 9.2e-16 89.0 214 34.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.7e-15 87.4 458 26.0
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 7.8e-15 85.9 319 29.2
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 6.6e-14 82.8 245 31.0
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 2.5e-13 80.9 219 30.1
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 3.3e-13 80.5 143 40.6
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.3e-13 80.1 460 26.3
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 6.8e-11 72.8 358 25.1
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 8.9e-11 72.4 128 36.7
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-10 70.9 132 35.6
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 5.8e-10 69.7 410 25.6
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 9.9e-10 68.9 256 30.9
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 9.9e-10 68.9 106 49.1
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 1.1e-08 65.5 76 52.6
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.4e-08 65.1 118 39.8
C09p11640 Brassica napus HOM05D003379 ORTHO05D003862 7.1e-08 62.8 194 30.4
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 7.1e-08 62.8 43 62.8
BolC9t57591H Brassica oleracea HOM05D013459 ORTHO05D018689 1.0e-06 58.9 192 30.2
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 5.1e-06 56.6 378 24.3
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 8.6e-06 55.8 247 28.7


User provided reference genes

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