Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 8.0e-140 500.4 243 100.0
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 4.3e-101 371.7 217 82.5
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.9e-93 346.3 217 76.5
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.3e-91 338.2 225 72.9
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 4.5e-90 335.1 230 72.2
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 5.8e-90 334.7 219 73.5
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 2.4e-88 329.3 231 71.9
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.3e-86 323.6 217 71.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 3.0e-86 322.4 217 71.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.0e-86 322.4 217 74.2
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.5e-85 319.3 217 71.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.3e-85 318.9 217 70.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 7.4e-85 317.8 218 72.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 9.6e-85 317.4 217 68.7
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.3e-84 317.0 222 68.9
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.3e-84 317.0 217 70.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.8e-83 313.2 217 68.7
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.4e-83 312.8 217 68.2
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 2.6e-82 309.3 217 65.9
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.7e-81 306.6 217 67.3
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 8.4e-81 304.3 221 67.0
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.4e-80 303.5 222 66.2
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.4e-80 303.5 218 67.4
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 3.2e-80 302.4 217 65.9
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 3.2e-80 302.4 217 66.8
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 7.1e-80 301.2 239 62.8
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 2.7e-79 299.3 223 66.8
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 4.6e-79 298.5 217 64.5
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 4.6e-79 298.5 217 65.4
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.3e-78 297.0 218 66.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 3.9e-78 295.4 217 64.5
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 5.1e-78 295.0 217 66.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 5.1e-78 295.0 218 67.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 6.7e-78 294.7 229 62.4
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 8.7e-78 294.3 217 64.1
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-77 293.1 229 64.2
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.9e-77 293.1 221 66.1
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.5e-77 292.7 217 66.8
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.6e-76 290.0 231 65.8
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.1e-76 289.7 220 63.2
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.1e-76 289.7 217 65.0
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.7e-76 288.9 208 67.3
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 4.8e-76 288.5 218 64.7
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 6.2e-76 288.1 217 63.1
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.2e-76 288.1 217 66.8
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 6.2e-76 288.1 236 61.4
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 8.2e-76 287.7 217 63.1
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 8.2e-76 287.7 217 61.8
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.1e-75 287.3 229 63.3
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.8e-75 286.6 235 60.9
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.8e-75 286.6 220 64.1
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 4.0e-75 285.4 211 65.4
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.5e-74 283.5 245 61.6
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.4e-74 282.3 218 63.3
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 4.5e-74 282.0 218 64.2
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 4.5e-74 282.0 225 61.8
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 5.8e-74 281.6 219 64.4
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 5.8e-74 281.6 226 61.5
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 5.8e-74 281.6 217 61.8
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 1.0e-73 280.8 218 64.2
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.0e-73 280.8 219 62.1
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.3e-73 280.4 217 62.2
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.8e-73 278.9 219 65.3
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 4.9e-73 278.5 220 62.3
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.4e-72 276.9 217 61.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 2.7e-71 272.7 219 63.0
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.7e-71 272.7 218 61.5
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 6.1e-71 271.6 218 60.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.0e-70 270.8 216 63.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.9e-70 268.9 216 62.5
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 3.9e-70 268.9 217 63.1
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 5.1e-70 268.5 217 62.2
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 2.8e-68 262.7 232 56.0
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 3.7e-68 262.3 222 57.7
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 4.8e-68 261.9 219 58.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 6.3e-68 261.5 220 61.8
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 8.2e-68 261.2 239 54.8
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.4e-67 260.4 173 71.7
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.4e-67 260.4 195 67.2
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 2.4e-67 259.6 218 60.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 2.9e-65 252.7 219 58.0
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 3.2e-64 249.2 198 63.6
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 4.2e-64 248.8 189 65.6
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-63 247.3 199 60.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 2.7e-63 246.1 178 65.7
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 3.3e-61 239.2 208 57.2
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 8.2e-60 234.6 221 57.0
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.7e-57 226.9 214 57.9
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.1e-56 224.2 152 72.4
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.4e-56 223.8 272 46.7
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.5e-56 223.0 207 55.1
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.7e-55 219.5 159 67.3
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.7e-55 219.5 220 53.2
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 2.3e-54 216.5 174 62.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 3.0e-54 216.1 227 50.7
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.4e-51 206.5 119 79.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.4e-51 206.5 119 79.8
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.7e-49 200.3 218 52.8
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.9e-49 199.5 217 50.2
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 8.0e-47 191.4 205 49.8
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 7.4e-45 184.9 210 46.7
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.6e-42 176.4 223 44.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.0e-41 174.5 102 79.4
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 2.9e-41 172.9 218 41.7
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.8e-41 172.6 102 77.5
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 6.1e-39 165.2 203 47.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 8.8e-38 161.4 196 46.4
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 8.8e-38 161.4 220 42.3
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 4.4e-37 159.1 95 78.9
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.7e-37 158.7 111 65.8
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.2e-36 156.8 163 53.4
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 3.7e-36 156.0 196 46.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.8e-36 155.6 163 53.4
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.7e-34 149.8 211 42.2
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 2.7e-34 149.8 228 41.2
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 5.9e-34 148.7 227 40.1
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.1e-32 144.4 209 43.1
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.3e-30 136.7 123 57.7
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.0e-30 136.0 138 52.9
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.2e-29 134.4 123 56.9
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.4e-27 127.5 139 50.4
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.0e-25 121.3 102 58.8
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 8.6e-25 118.2 111 52.3
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.6e-23 114.0 100 57.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.0e-17 94.7 53 81.1
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 5.0e-17 92.4 50 84.0
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 7.3e-16 88.6 81 50.6
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.6e-15 86.3 83 51.8
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 1.0e-14 84.7 50 76.0
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 6.4e-12 75.5 111 37.8
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.2e-11 73.2 67 52.2
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.1e-11 72.8 67 52.2
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.7e-10 70.1 43 72.1
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.9e-08 63.9 69 47.8
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.8e-07 60.1 71 45.1


User provided reference genes

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