Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 4.4e-79 297.7 135 100.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 94.1
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.4e-69 265.4 135 85.9
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 7.0e-69 263.8 135 84.4
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.6e-68 262.7 135 84.4
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 5.9e-68 260.8 135 82.2
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 2.3e-67 258.8 135 84.4
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.3e-67 258.8 135 81.5
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.9e-67 258.5 135 82.2
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 5.0e-67 257.7 133 81.2
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 5.0e-67 257.7 135 81.5
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 8.6e-67 256.9 135 80.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.5e-66 256.1 135 81.5
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.9e-66 255.8 135 82.2
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.3e-66 255.0 135 80.7
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 80.7
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 8.0e-65 250.4 147 76.2
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.0e-64 250.0 135 78.5
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 5.2e-64 247.7 148 75.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 5.2e-64 247.7 148 76.4
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.8e-64 247.3 137 78.8
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.8e-64 247.3 137 78.8
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.8e-64 247.3 137 78.8
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.2e-63 246.5 134 78.4
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.5e-63 246.1 135 78.5
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.4e-63 245.0 147 76.2
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 7.5e-63 243.8 145 74.5
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.7e-62 242.7 148 74.3
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.7e-62 242.7 135 77.8
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.2e-62 242.3 123 85.4
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 2.2e-62 242.3 126 82.5
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.9e-62 241.9 153 72.5
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 3.7e-62 241.5 135 77.8
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 8.3e-62 240.4 135 77.0
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-61 240.0 150 71.3
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.4e-61 239.6 143 74.1
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.4e-61 238.8 131 78.6
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.4e-61 238.8 159 65.4
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.4e-61 238.8 135 77.8
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 3.2e-61 238.4 150 72.0
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.2e-61 238.4 152 69.7
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 75.6
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 5.4e-61 237.7 148 72.3
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-60 236.5 131 77.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.2e-60 236.5 153 69.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.6e-60 236.1 130 78.5
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 2.0e-60 235.7 136 76.5
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 2.0e-60 235.7 136 76.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.0e-60 235.7 131 77.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 2.0e-60 235.7 135 74.8
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.7e-60 235.3 136 75.7
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 2.7e-60 235.3 144 73.6
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 3.5e-60 235.0 157 68.8
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 4.6e-60 234.6 123 83.7
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.9e-60 234.2 153 69.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 76.3
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 7.8e-60 233.8 153 69.9
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.7e-59 232.6 159 67.3
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 73.3
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 73.3
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.9e-59 231.5 153 68.6
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 5.0e-59 231.1 147 67.3
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 5.0e-59 231.1 141 72.3
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 6.6e-59 230.7 135 74.1
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 6.6e-59 230.7 142 72.5
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 73.3
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 73.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 8.6e-59 230.3 149 70.5
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-58 229.6 135 73.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.9e-58 229.2 135 72.6
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.9e-58 229.2 135 74.8
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 73.3
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.3e-58 228.4 147 66.7
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 4.3e-58 228.0 135 72.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 5.6e-58 227.6 122 79.5
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 5.6e-58 227.6 135 72.6
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 9.5e-58 226.9 135 72.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 9.5e-58 226.9 135 71.9
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.2e-57 226.5 132 75.0
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.1e-57 225.7 133 73.7
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.6e-57 224.9 151 66.2
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.6e-57 224.9 151 66.2
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 6.2e-57 224.2 132 75.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.0e-56 223.4 147 66.7
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.0e-56 223.4 138 73.2
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.8e-56 222.6 123 78.0
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 4.0e-56 221.5 133 73.7
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.5e-55 219.5 149 65.1
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.0e-55 219.2 145 66.9
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 3.4e-55 218.4 122 76.2
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 7.5e-55 217.2 135 71.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.2e-54 215.7 130 70.8
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.7e-54 214.9 133 69.2
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 6.4e-54 214.2 142 67.6
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.1e-53 213.4 139 69.1
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.9e-53 212.6 135 68.9
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 2.4e-53 212.2 130 69.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.2e-53 210.3 126 71.4
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.2e-52 209.9 135 69.6
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.6e-52 209.5 136 67.6
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 3.5e-52 208.4 167 57.5
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.0e-51 206.8 130 73.1
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.0e-51 205.3 143 64.3
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 5.0e-51 204.5 134 70.1
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.2e-49 199.9 148 61.5
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.6e-49 199.5 154 62.3
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.0e-48 194.9 113 73.5
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.0e-48 194.9 113 73.5
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.9e-46 188.7 123 66.7
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.1e-45 186.8 159 54.7
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.7e-43 179.5 173 51.4
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 8.1e-41 170.6 105 69.5
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.1e-37 160.2 124 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.9e-37 159.5 119 57.1
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.9e-35 151.8 136 51.5
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.6e-35 150.6 87 75.9
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 5.6e-34 147.9 126 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.1e-32 143.7 144 48.6
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.8e-32 142.9 75 82.7
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 3.3e-26 122.1 59 88.1
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.6e-25 119.8 57 86.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.1e-20 102.8 114 47.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.1e-17 90.9 54 66.7
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.1e-16 89.0 72 55.6
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.9e-16 87.8 81 49.4
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.5e-15 85.1 80 48.8
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 9.9e-15 84.0 80 47.5
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 2.2e-14 82.8 105 41.9
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 2.9e-14 82.4 106 40.6
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.4e-13 80.1 75 54.7
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 6.7e-11 71.2 40 72.5
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 4.3e-10 68.6 111 34.2
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 9.6e-10 67.4 49 57.1
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.6e-09 66.6 50 56.0
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.8e-09 65.1 52 53.8
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.8e-09 65.1 52 53.8
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.2e-09 64.7 53 52.8
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-08 62.4 102 32.4
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.3e-08 61.6 53 50.9
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 6.9e-08 61.2 53 52.8
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 2.6e-07 59.3 48 56.2


User provided reference genes

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