Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 2.6e-29 131.3 64 100.0
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 2.2e-20 101.7 64 73.4
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 9.2e-19 96.3 63 73.0
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 1.2e-18 95.9 60 73.3
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.6e-18 95.5 63 73.0
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.6e-18 95.5 63 71.4
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 1.6e-18 95.5 63 71.4
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 3.5e-18 94.4 64 70.3
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 4.6e-18 94.0 64 73.4
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 6.6e-17 90.1 63 71.4
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 8.6e-17 89.7 60 66.7
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 2.5e-16 88.2 61 70.5
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 3.3e-16 87.8 58 70.7
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 4.3e-16 87.4 60 65.0
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 4.3e-16 87.4 60 70.0
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 5.6e-16 87.0 60 63.3
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 5.6e-16 87.0 59 69.5
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 7.3e-16 86.7 61 68.9
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 9.5e-16 86.3 57 73.7
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 1.2e-15 85.9 60 71.7
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 1.2e-15 85.9 60 63.3
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 1.2e-15 85.9 64 65.6
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.6e-15 85.5 60 63.3
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 1.6e-15 85.5 54 70.4
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 1.6e-15 85.5 60 66.7
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 1.6e-15 85.5 60 66.7
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 1.6e-15 85.5 52 73.1
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 4.7e-15 84.0 64 59.4
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 6.2e-15 83.6 60 68.3
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 8.0e-15 83.2 60 61.7
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 1.0e-14 82.8 61 62.3
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 1.4e-14 82.4 52 71.2
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 2.3e-14 81.6 59 64.4
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 2.3e-14 81.6 60 60.0
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 2.3e-14 81.6 60 60.0
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 2.3e-14 81.6 46 78.3
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 3.1e-14 81.3 59 62.7
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 4.0e-14 80.9 43 81.4
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 4.0e-14 80.9 62 71.0
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 6.8e-14 80.1 61 63.9
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 8.9e-14 79.7 60 58.3
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 8.9e-14 79.7 57 57.9
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 1.5e-13 79.0 45 75.6
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 2.0e-13 78.6 60 60.0
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 2.6e-13 78.2 59 66.1
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 3.4e-13 77.8 52 69.2
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 4.4e-13 77.4 43 86.0
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 4.4e-13 77.4 60 63.3
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 5.8e-13 77.0 59 64.4
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 7.5e-13 76.6 59 67.8
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 7.5e-13 76.6 63 61.9
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 1.3e-12 75.9 43 79.1
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 2.2e-12 75.1 51 66.7
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 2.9e-12 74.7 62 61.3
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 3.7e-12 74.3 58 67.2
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 3.7e-12 74.3 43 72.1
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 6.4e-12 73.6 57 63.2
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 6.4e-12 73.6 56 64.3
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 8.3e-12 73.2 59 64.4
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 8.3e-12 73.2 55 65.5
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 1.1e-11 72.8 46 76.1
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 2.4e-11 71.6 45 66.7
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 4.1e-11 70.9 56 66.1
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 5.4e-11 70.5 42 71.4
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 9.2e-11 69.7 63 61.9
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 1.6e-10 68.9 43 62.8
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 1.6e-10 68.9 63 58.7
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 1.6e-10 68.9 63 58.7
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 1.6e-10 68.9 63 58.7
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 1.6e-10 68.9 63 58.7
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 1.6e-10 68.9 53 64.2
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 1.6e-10 68.9 63 58.7
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 2.0e-10 68.6 58 62.1
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 2.0e-10 68.6 58 62.1
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 2.7e-10 68.2 62 58.1
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 2.7e-10 68.2 62 58.1
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 2.7e-10 68.2 43 67.4
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 3.5e-10 67.8 54 64.8
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 4.6e-10 67.4 43 72.1
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 6.0e-10 67.0 49 63.3
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 1.0e-09 66.2 54 63.0
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 1.0e-09 66.2 65 55.4
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 1.5e-08 62.4 54 61.1
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 1.9e-08 62.0 65 50.8


User provided reference genes

Program Settings