Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 0.0e+00 1283.5 641 100.0
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 7.8e-259 897.1 644 69.6
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 7.3e-241 837.4 635 66.1
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.2e-230 803.5 640 63.0
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.7e-229 799.7 639 62.4
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.7e-226 789.6 642 61.8
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 4.3e-225 785.0 646 63.0
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 4.3e-225 785.0 632 63.3
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 7.3e-225 784.3 644 63.0
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 2.8e-224 782.3 651 61.3
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.2e-222 776.9 638 62.4
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-222 776.9 638 62.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 2.6e-222 775.8 636 62.7
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 4.4e-222 775.0 638 62.1
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 9.9e-222 773.9 635 62.0
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 9.9e-222 773.9 635 62.0
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.7e-221 773.1 635 62.5
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.4e-221 770.8 640 61.7
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.9e-220 769.6 636 61.3
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 3.2e-220 768.8 646 61.3
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 4.6e-219 765.0 640 60.2
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.3e-218 763.5 641 61.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 3.9e-218 761.9 638 61.1
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 2.5e-217 759.2 638 61.3
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.6e-216 756.5 642 61.5
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.4e-215 753.4 653 58.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 4.0e-215 751.9 646 61.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 6.9e-215 751.1 640 59.7
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 5.8e-214 748.0 638 61.3
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.6e-211 740.0 637 57.9
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.7e-211 739.2 637 60.0
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.5e-211 738.8 646 59.9
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 3.5e-211 738.8 636 59.0
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.0e-210 737.3 647 60.0
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.3e-210 736.9 643 58.8
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 8.7e-210 734.2 640 58.9
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 1.9e-209 733.0 647 59.8
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 7.4e-209 731.1 633 59.2
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 5.3e-207 724.9 647 57.8
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 5.3e-207 724.9 639 57.7
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 9.0e-207 724.2 641 58.0
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.2e-206 723.8 631 58.2
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.6e-206 722.6 635 58.7
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.7e-205 719.9 643 57.7
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.7e-205 719.9 503 70.0
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.2e-205 719.5 631 58.5
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.7e-203 712.6 638 57.4
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 6.0e-203 711.4 637 55.7
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 6.0e-203 711.4 637 57.5
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 2.3e-202 709.5 640 56.7
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 8.7e-202 707.6 640 58.8
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.5e-201 706.8 532 67.1
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.9e-201 706.4 639 58.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.9e-201 706.4 608 59.0
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 2.5e-201 706.1 645 58.3
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.3e-200 703.7 645 58.1
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.1e-199 700.7 636 56.0
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 2.0e-198 696.4 647 54.7
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 5.8e-198 694.9 647 54.4
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.7e-197 693.3 642 56.5
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.7e-197 693.3 560 62.0
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 5.5e-196 688.3 626 57.5
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.5e-196 688.3 625 57.9
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.6e-195 686.8 644 57.1
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 2.2e-192 676.4 638 54.4
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.1e-191 674.1 439 72.7
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.8e-191 673.3 638 54.9
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 2.4e-191 672.9 638 55.3
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 3.2e-188 662.5 641 53.7
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 7.2e-188 661.4 639 55.2
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.0e-186 657.5 659 54.5
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.7e-185 651.7 484 65.3
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.7e-185 651.7 484 65.3
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 9.1e-183 644.4 642 52.8
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.3e-181 640.6 442 67.9
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 5.0e-181 638.6 584 56.8
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.9e-178 629.0 633 52.3
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 5.7e-177 625.2 534 60.3
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.4e-175 619.8 703 48.8
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.9e-172 610.1 564 56.9
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.4e-172 607.8 557 55.5
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 2.2e-168 596.7 514 59.3
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 5.3e-167 592.0 401 71.3
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 5.0e-165 585.5 535 54.4
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.1e-164 584.3 647 50.5
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 8.0e-163 578.2 622 50.8
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 6.7e-162 575.1 383 71.8
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 7.0e-159 565.1 384 70.1
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.0e-157 561.2 544 53.5
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.2e-157 560.1 607 50.2
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.9e-156 557.0 390 67.4
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.9e-156 557.0 390 67.4
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 3.2e-156 556.2 387 68.2
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 7.2e-156 555.1 533 53.5
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 6.1e-155 552.0 387 68.5
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.0e-153 547.0 535 52.5
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.8e-152 543.1 453 59.8
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 4.1e-151 539.3 530 53.2
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.7e-149 533.9 515 55.9
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 3.3e-148 529.6 490 56.9
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.0e-146 522.7 548 49.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 3.6e-139 499.6 464 56.7
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 4.9e-136 489.2 490 54.5
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.1e-131 473.8 493 51.5
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.4e-127 461.1 469 50.7
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 7.8e-126 455.3 392 57.4
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.3e-120 438.0 461 49.7
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 2.4e-119 433.7 512 45.9
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 7.8e-118 428.7 342 59.1
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 9.2e-111 405.2 507 42.4
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-110 404.8 362 52.8
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 3.9e-109 399.8 264 72.0
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 6.0e-102 375.9 258 66.3
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 3.5e-94 350.1 305 55.7
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.9e-92 344.4 475 41.7
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.1e-91 340.9 276 58.7
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 9.0e-90 335.5 345 52.2
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.6e-89 334.0 384 46.4
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 5.8e-89 332.8 448 39.7
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 9.7e-76 288.9 199 65.8
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.3e-66 256.5 501 33.7
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 4.2e-63 246.9 160 71.9
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 1.8e-50 204.9 254 48.4
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 7.0e-50 203.0 133 69.2
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 4.7e-46 190.3 234 48.7
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.4e-44 184.1 195 43.6
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.2e-40 171.4 261 40.6
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 9.8e-36 156.0 157 54.8
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.7e-35 154.1 120 60.8
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.3e-35 153.3 122 62.3
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.4e-34 150.2 122 61.5
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.7e-32 145.2 233 40.3
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 3.8e-32 144.1 155 50.3
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 7.5e-20 103.2 86 59.3
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 3.5e-17 94.4 240 30.8
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.9e-16 90.9 140 42.9
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 3.4e-12 77.8 143 35.7
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 2.1e-09 68.6 65 53.8
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 2.1e-09 68.6 65 53.8
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 8.6e-08 63.2 54 59.3


User provided reference genes

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