Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 2.8e-42 174.9 88 100.0
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 2.4e-33 145.2 88 80.7
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 3.1e-33 144.8 88 80.7
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 1.5e-32 142.5 88 79.5
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 1.5e-32 142.5 88 79.5
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 3.4e-32 141.4 88 78.4
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 3.4e-32 141.4 88 79.5
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 4.5e-32 141.0 88 79.5
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 5.8e-32 140.6 89 77.5
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 1.3e-31 139.4 87 79.3
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 1.7e-31 139.0 88 78.4
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 1.7e-31 139.0 88 75.0
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 2.9e-31 138.3 88 77.3
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 2.9e-31 138.3 88 79.5
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 8.4e-31 136.7 88 75.0
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 2.5e-30 135.2 88 75.0
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 3.2e-30 134.8 84 78.6
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 1.6e-29 132.5 88 72.7
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 2.1e-29 132.1 89 78.7
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 4.6e-29 131.0 81 80.2
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 4.6e-29 131.0 84 76.2
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 7.9e-29 130.2 88 73.9
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 7.9e-29 130.2 88 75.0
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.8e-28 129.0 88 72.7
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.8e-28 129.0 88 72.7
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 3.0e-28 128.3 87 74.7
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 3.0e-28 128.3 88 73.9
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 6.7e-28 127.1 79 79.7
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 8.7e-28 126.7 90 72.2
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 1.1e-27 126.3 89 73.0
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 1.1e-27 126.3 88 71.6
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 1.9e-27 125.6 88 69.3
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 4.3e-27 124.4 88 72.7
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 5.6e-27 124.0 101 65.3
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 9.6e-27 123.2 81 71.6
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 8.2e-26 120.2 88 67.0
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 1.1e-25 119.8 81 69.1
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 1.8e-25 119.0 88 68.2
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 2.4e-25 118.6 83 69.9
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 5.3e-25 117.5 77 74.0
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 2.0e-24 115.5 80 68.8
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 4.5e-24 114.4 84 66.7
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 4.5e-24 114.4 81 70.4
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 5.8e-24 114.0 84 65.5
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 7.6e-24 113.6 84 64.3
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 7.6e-24 113.6 103 61.2
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 1.3e-23 112.8 84 66.7
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.3e-23 112.8 81 67.9
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 2.2e-23 112.1 84 63.1
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 3.8e-23 111.3 81 67.9
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 4.9e-23 110.9 69 79.7
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 6.5e-23 110.5 84 63.1
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 1.1e-22 109.8 87 64.4
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 1.9e-22 109.0 85 60.0
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 5.5e-22 107.5 84 60.7
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 5.5e-22 107.5 84 60.7
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 1.2e-21 106.3 84 60.7
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 1.2e-21 106.3 84 59.5
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 1.2e-21 106.3 84 60.7
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 3.5e-21 104.8 84 58.3
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 7.9e-21 103.6 81 64.2
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 1.3e-20 102.8 79 70.9
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 1.3e-20 102.8 79 63.3
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 1.5e-19 99.4 129 47.3
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 3.3e-19 98.2 86 50.0
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 4.3e-19 97.8 84 53.6
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 4.8e-18 94.4 84 52.4
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 3.1e-17 91.7 117 47.0
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 1.3e-15 86.3 79 60.8
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 1.4e-14 82.8 85 54.1
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 2.1e-13 79.0 103 49.5
AagrBONN_evm.TU.Sc2ySwM_228.1824 Anthoceros agrestis HOM05D008013 ORTHO05D010149 3.9e-12 74.7 80 47.5
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 6.7e-12 73.9 42 83.3
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 1.5e-11 72.8 49 67.3
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 4.3e-11 71.2 50 70.0
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 1.7e-10 69.3 44 75.0
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 3.1e-09 65.1 58 56.9
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 3.1e-09 65.1 50 64.0
Mapoly0013s0068 Marchantia polymorpha HOM05D008013 ORTHO05D010149 9.1e-09 63.5 82 40.2
Eucgr.B01381 Eucalyptus grandis HOM05D008013 ORTHO05D010149 4.5e-08 61.2 80 45.0
ATR0609G113 Amborella trichopoda HOM05D008013 ORTHO05D010149 1.1e-06 56.6 50 48.0


User provided reference genes

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