Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 8.3e-61 236.9 122 100.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 2.6e-38 162.2 112 77.7
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.3e-26 122.5 126 57.1
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.4e-20 103.2 106 61.3
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 5.4e-20 101.3 86 66.3
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 7.9e-19 97.4 106 55.7
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.0e-18 97.1 86 65.1
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.3e-18 96.7 86 65.1
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 4.3e-17 91.7 116 50.9
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.6e-16 89.7 106 52.8
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 2.1e-16 89.4 108 51.9
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.1e-16 89.4 110 57.3
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 3.6e-16 88.6 105 54.3
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 3.6e-16 88.6 120 50.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 3.6e-16 88.6 110 56.4
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 4.8e-16 88.2 72 63.9
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 6.2e-16 87.8 109 57.8
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 1.5e-14 83.2 109 53.2
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 2.0e-14 82.8 65 67.7
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 2.6e-14 82.4 119 52.1
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 4.5e-14 81.6 65 67.7
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 5.8e-14 81.3 96 55.2
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 5.8e-14 81.3 85 60.0
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 5.8e-14 81.3 111 50.5
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 9.9e-14 80.5 106 54.7
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.7e-13 79.7 95 53.7
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 2.9e-13 79.0 83 61.4
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 2.9e-13 79.0 66 63.6
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 3.8e-13 78.6 92 54.3
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 6.4e-13 77.8 99 54.5
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 8.4e-13 77.4 83 59.0
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.1e-12 77.0 103 53.4
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 1.1e-12 77.0 85 50.6
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.4e-12 76.6 89 57.3
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.4e-12 76.6 68 61.8
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.9e-12 76.3 82 57.3
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 3.2e-12 75.5 115 46.1
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 3.2e-12 75.5 99 53.5
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 3.2e-12 75.5 78 59.0
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 4.2e-12 75.1 98 53.1
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 4.2e-12 75.1 98 53.1
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 4.2e-12 75.1 98 53.1
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.2e-12 75.1 70 62.9
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 5.4e-12 74.7 81 60.5
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 5.4e-12 74.7 94 54.3
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 7.1e-12 74.3 127 41.7
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 7.1e-12 74.3 125 47.2
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 7.1e-12 74.3 81 55.6
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 9.3e-12 73.9 81 59.3
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.2e-11 73.6 71 64.8
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 1.6e-11 73.2 112 46.4
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 2.1e-11 72.8 79 50.6
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 2.1e-11 72.8 83 53.0
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 2.1e-11 72.8 97 51.5
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 2.7e-11 72.4 111 46.8
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 4.6e-11 71.6 92 46.7
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 4.6e-11 71.6 70 60.0
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 1.0e-10 70.5 102 46.1
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 2.3e-10 69.3 100 48.0
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 2.3e-10 69.3 67 58.2
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 2.3e-10 69.3 61 57.4
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.0e-10 68.9 62 67.7
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.0e-10 68.9 62 67.7
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.0e-10 68.9 62 67.7
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.9e-10 68.6 53 75.5
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.1e-09 67.0 62 66.1
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 1.1e-09 67.0 96 45.8
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 5.6e-09 64.7 80 51.2
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 9.6e-09 63.9 98 49.0
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 1.6e-08 63.2 89 51.7
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 1.6e-08 63.2 80 53.8
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 1.6e-08 63.2 80 53.8
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 1.6e-08 63.2 80 53.8
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.6e-08 63.2 75 54.7
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 2.1e-08 62.8 111 45.0
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 2.1e-08 62.8 107 44.9
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 2.1e-08 62.8 65 55.4
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.8e-08 62.4 64 54.7
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 2.8e-08 62.4 103 45.6
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 8.1e-08 60.8 80 52.5
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.1e-07 60.5 44 72.7
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.4e-07 60.1 89 50.6
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.8e-07 59.7 80 52.5
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 2.4e-07 59.3 89 48.3
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 3.1e-07 58.9 89 51.7
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 4.0e-07 58.5 107 41.1
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 5.3e-07 58.2 96 41.7
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 9.0e-07 57.4 88 46.6
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-06 57.0 74 47.3
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 2.0e-06 56.2 76 50.0
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.0e-06 56.2 145 37.2
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 2.6e-06 55.8 122 40.2
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 7.6e-06 54.3 89 48.3


User provided reference genes

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