Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.1e-58 228.8 112 100.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.5e-51 205.3 112 87.5
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.5e-43 178.7 116 81.9
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 4.2e-43 177.9 116 81.0
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.1e-42 174.1 110 77.3
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.3e-41 172.2 110 76.4
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.0e-41 171.8 113 79.6
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 3.9e-41 171.4 110 75.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.5e-40 168.7 109 77.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.7e-40 167.5 113 77.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 9.7e-40 166.8 110 71.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 9.7e-40 166.8 110 71.8
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.2e-39 165.6 110 74.5
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.7e-39 164.9 109 69.7
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.3e-39 164.1 112 76.8
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 8.2e-39 163.7 111 73.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 8.2e-39 163.7 109 74.3
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.4e-38 162.9 109 72.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.4e-38 162.9 109 72.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.8e-38 162.5 111 74.8
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 2.4e-38 162.2 109 74.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.4e-38 162.2 111 71.2
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 4.1e-38 161.4 110 73.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 4.1e-38 161.4 111 72.1
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.3e-38 161.0 109 72.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.3e-38 161.0 109 70.6
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.0e-37 159.1 109 71.6
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.0e-37 159.1 109 71.6
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.0e-37 159.1 109 71.6
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.0e-37 159.1 116 69.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.6e-37 158.7 109 69.7
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.4e-37 158.3 111 68.5
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 4.5e-37 157.9 109 72.5
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.9e-37 157.5 111 69.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.9e-37 157.5 109 69.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 7.7e-37 157.1 109 67.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-36 156.4 114 68.4
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.3e-36 156.4 107 72.0
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.2e-36 155.6 107 73.8
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.9e-36 155.2 112 69.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.1e-35 153.3 109 66.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.1e-35 153.3 110 69.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.4e-35 152.9 114 65.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.9e-35 152.5 109 69.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-35 152.1 109 67.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.5e-35 152.1 109 66.1
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.2e-35 151.8 109 67.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.2e-35 151.8 110 65.5
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.2e-35 151.8 154 58.4
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.2e-35 151.4 107 70.1
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 4.2e-35 151.4 109 64.2
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.5e-35 151.0 111 69.4
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 9.4e-35 150.2 107 69.2
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 9.4e-35 150.2 110 64.5
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 9.4e-35 150.2 143 56.6
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.4e-35 150.2 114 69.3
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-34 149.8 108 67.6
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-34 149.4 110 64.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.6e-34 149.4 110 64.5
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-34 149.1 110 64.5
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-34 148.7 110 63.6
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-34 148.7 110 64.5
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.6e-34 148.3 109 67.0
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.6e-34 148.3 110 68.2
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 3.6e-34 148.3 90 78.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.6e-34 148.3 87 79.3
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 4.7e-34 147.9 115 65.2
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 4.7e-34 147.9 109 67.0
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 4.7e-34 147.9 90 76.7
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 4.7e-34 147.9 101 70.3
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 6.1e-34 147.5 112 65.2
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 6.1e-34 147.5 108 69.4
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 6.1e-34 147.5 107 67.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 7.9e-34 147.1 84 81.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.9e-34 147.1 110 61.8
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 7.9e-34 147.1 110 62.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.9e-34 147.1 98 71.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.9e-34 147.1 139 57.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.0e-33 146.7 112 65.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.0e-33 146.7 109 66.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.0e-33 146.7 109 66.1
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.4e-33 146.4 111 64.9
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.4e-33 146.4 84 82.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.4e-33 146.4 98 70.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.4e-33 146.4 111 66.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.8e-33 146.0 110 63.6
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 3.0e-33 145.2 110 63.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.9e-33 144.8 110 63.6
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.9e-33 144.8 94 74.5
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.9e-33 144.8 109 65.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.9e-33 144.8 111 67.6
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.9e-33 144.8 111 64.9
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 5.1e-33 144.4 110 62.7
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.1e-33 144.4 109 64.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 6.7e-33 144.1 110 62.7
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 6.7e-33 144.1 91 72.5
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.7e-33 144.1 110 62.7
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 8.8e-33 143.7 103 69.9
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.1e-32 143.3 88 75.0
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-32 143.3 111 64.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.0e-32 142.5 109 64.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.6e-32 142.1 111 62.2
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.6e-32 142.1 101 68.3
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 7.4e-32 140.6 155 49.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 9.7e-32 140.2 109 59.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 9.7e-32 140.2 110 62.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-31 139.8 110 59.1
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.7e-31 139.4 128 58.6
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.7e-31 139.4 103 67.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.2e-31 139.0 108 64.8
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.7e-31 138.3 114 59.6
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 8.2e-31 137.1 112 62.5
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 8.2e-31 137.1 111 61.3
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.4e-30 135.6 111 62.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 4.1e-30 134.8 86 74.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 4.1e-30 134.8 86 75.6
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 59.8
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.4e-29 131.7 114 60.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.4e-29 131.7 111 58.6
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.2e-28 129.0 82 69.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.2e-28 129.0 82 69.5
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.0e-28 127.9 79 77.2
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 8.5e-28 127.1 112 57.1
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.5e-27 124.4 82 67.1
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.1e-26 122.5 120 55.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.0e-25 118.6 86 68.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.8e-25 117.1 110 58.2
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 5.7e-24 114.4 85 64.7
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.4e-24 114.0 89 61.8
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 7.4e-24 114.0 85 64.7
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.7e-23 111.7 105 60.0
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.4e-22 109.8 95 66.3
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.4e-22 109.0 81 66.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.4e-22 109.0 70 71.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.1e-22 108.6 112 56.2
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.2e-21 106.7 89 59.6
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 3.5e-21 105.1 92 55.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.9e-21 104.4 87 63.2
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.0e-20 103.6 92 59.8
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.7e-20 102.8 87 64.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.9e-20 102.1 87 63.2
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.5e-19 99.8 70 70.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 6.1e-18 94.4 63 73.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.3e-16 88.6 69 58.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 9.7e-16 87.0 75 56.0
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 9.7e-16 87.0 75 56.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 9.7e-16 87.0 72 59.7
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-15 86.7 91 51.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.4e-14 82.4 54 74.1
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.4e-14 82.4 59 69.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 4.1e-14 81.6 79 49.4
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 4.1e-14 81.6 55 69.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.0e-14 80.9 51 74.5
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.0e-12 77.0 67 55.2
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.0e-12 74.7 90 45.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.5e-11 73.2 63 55.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.4e-11 70.5 43 79.1
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 6.8e-09 64.3 76 47.4
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.8e-09 63.9 50 68.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 9.8e-08 60.5 70 45.7
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.8e-07 58.9 65 43.1
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.8e-07 58.9 65 43.1
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.3e-07 57.4 46 65.2


User provided reference genes

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