Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 3.4e-144 515.0 264 100.0
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.0e-108 397.1 263 76.8
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.8e-108 396.4 256 78.9
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.1e-107 393.7 244 81.1
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 4.8e-106 388.3 233 82.0
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.4e-105 386.7 265 73.6
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 4.5e-104 381.7 254 74.4
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 3.2e-102 375.6 266 72.6
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 5.5e-102 374.8 249 75.9
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 5.5e-102 374.8 268 71.3
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 7.2e-102 374.4 254 72.0
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 9.4e-102 374.0 244 74.6
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.2e-101 373.6 266 70.7
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.7e-101 372.5 247 74.5
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 4.7e-101 371.7 249 75.9
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 4.7e-101 371.7 244 73.8
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 8.0e-101 370.9 244 73.8
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 2.3e-100 369.4 243 74.5
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.3e-100 369.4 243 73.3
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.3e-100 369.4 245 73.1
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 8.8e-100 367.5 248 71.8
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 8.8e-100 367.5 247 73.7
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.5e-99 366.7 257 74.7
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 2.0e-99 366.3 249 75.1
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 4.4e-99 365.2 253 73.9
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 4.8e-98 361.7 249 75.5
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 2.4e-97 359.4 245 71.4
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 3.1e-97 359.0 246 73.2
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.1e-97 359.0 252 73.0
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 1.6e-96 356.7 263 70.0
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 3.5e-96 355.5 266 69.5
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.2e-95 352.8 233 74.2
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 6.5e-95 351.3 246 70.7
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.1e-94 350.5 262 67.6
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 1.1e-94 350.5 243 74.9
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.5e-94 349.4 261 66.3
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.5e-94 349.4 233 73.4
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 4.2e-94 348.6 233 73.4
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.6e-93 346.7 245 71.4
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.6e-93 345.5 232 72.0
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.6e-93 345.5 232 72.0
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 8.0e-93 344.4 245 71.0
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 8.0e-93 344.4 236 69.1
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 8.0e-93 344.4 259 69.5
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 4.0e-92 342.0 244 70.1
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 6.8e-92 341.3 405 49.6
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 6.8e-92 341.3 264 67.8
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 8.8e-92 340.9 258 68.2
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 1.2e-91 340.5 225 76.9
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.5e-91 340.1 235 71.9
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 3.4e-91 339.0 265 65.3
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 3.4e-91 339.0 248 69.8
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 4.4e-91 338.6 233 70.4
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 7.5e-91 337.8 258 65.9
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 9.8e-91 337.4 250 67.2
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.7e-90 336.7 265 65.3
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 1.7e-90 336.7 264 62.9
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 2.8e-90 335.9 250 68.8
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 4.8e-90 335.1 225 75.6
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 6.3e-90 334.7 230 69.1
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.4e-89 333.6 265 63.0
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 1.8e-89 333.2 261 65.5
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 4.1e-89 332.0 261 65.5
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 7.0e-89 331.3 247 69.6
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.2e-88 330.5 261 65.1
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 3.5e-88 328.9 269 62.5
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 1.3e-87 327.0 223 74.0
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 2.9e-87 325.9 234 68.4
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 3.8e-87 325.5 258 63.2
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 3.8e-87 325.5 251 63.7
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 3.8e-87 325.5 223 74.0
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 1.1e-86 323.9 266 62.0
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.5e-86 323.6 234 66.2
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 3.2e-86 322.4 251 63.3
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 4.2e-86 322.0 263 64.6
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 5.5e-86 321.6 255 62.4
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 5.5e-86 321.6 234 67.1
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 7.2e-86 321.2 255 62.4
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 1.6e-85 320.1 197 79.2
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 3.6e-85 318.9 248 63.7
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 8.0e-85 317.8 222 70.7
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 1.4e-84 317.0 229 69.4
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.8e-84 316.6 239 70.3
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 6.3e-82 308.1 248 61.7
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 6.3e-82 308.1 247 63.6
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 8.3e-82 307.8 232 67.7
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.1e-81 307.4 251 61.4
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.1e-81 307.4 255 64.7
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 7.0e-81 304.7 243 63.8
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 7.0e-81 304.7 212 68.4
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 9.2e-81 304.3 249 62.2
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 9.2e-81 304.3 249 62.2
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 5.0e-79 298.5 226 65.5
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.0e-76 290.8 237 64.1
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 1.8e-76 290.0 264 58.0
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 3.4e-75 285.8 258 55.4
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 2.4e-65 253.1 189 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 3.4e-59 232.6 215 54.4
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 1.4e-57 227.3 199 58.3
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.9e-57 226.9 212 53.3
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 2.4e-57 226.5 207 62.8
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 4.1e-57 225.7 198 54.5
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 2.9e-50 203.0 161 68.9
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 3.0e-47 193.0 139 64.7
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 6.8e-44 181.8 224 44.6
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.3e-39 167.5 98 82.7
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.1e-36 157.9 101 74.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.4e-33 147.5 127 58.3
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 4.8e-29 132.5 106 69.8
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 3.2e-17 93.2 224 33.9
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 6.5e-10 68.9 201 29.9
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 1.3e-07 61.2 222 27.0
Pp3c25_4890 Physcomitrium patens HOM05D001530 ORTHO05D003676 1.8e-07 60.8 199 25.6
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 2.3e-07 60.5 193 28.0
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 3.9e-07 59.7 205 27.8
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 8.7e-07 58.5 146 26.7
HanXRQChr09g0267031 Helianthus annuus HOM05D005243 ORTHO05D006670 4.3e-06 56.2 187 27.3
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 9.7e-06 55.1 194 27.3
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 9.7e-06 55.1 153 26.8
HanXRQChr13g0417201 Helianthus annuus HOM05D001082 ORTHO05D001538 9.7e-06 55.1 163 28.2


User provided reference genes

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