Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.5e-182 642.9 371 100.0
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.7e-147 525.8 372 78.2
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 8.7e-146 520.8 374 80.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.6e-139 500.0 373 73.7
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.7e-136 490.0 366 74.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 4.8e-136 488.4 375 73.3
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.3e-135 485.0 370 72.7
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 6.9e-135 484.6 377 72.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.5e-134 481.9 399 68.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.5e-134 481.9 399 68.2
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.8e-133 478.8 399 67.7
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.1e-132 477.2 403 69.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.5e-132 476.1 448 62.3
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.3e-130 469.5 397 72.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.0e-130 469.2 372 70.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 6.7e-130 468.0 371 70.9
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.4e-127 460.3 383 69.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-126 457.2 372 69.1
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 6.1e-123 444.9 403 64.5
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 6.7e-122 441.4 363 70.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 9.7e-121 437.6 359 68.8
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 9.7e-121 437.6 359 69.1
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 4.8e-120 435.3 368 69.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 4.1e-119 432.2 370 64.9
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.0e-118 429.9 390 66.2
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.7e-118 429.5 389 67.1
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.9e-118 428.3 390 65.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 6.5e-117 424.9 389 66.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.6e-115 419.1 385 66.0
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 6.8e-114 414.8 389 67.6
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 3.4e-113 412.5 391 62.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.7e-113 411.8 335 70.1
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.7e-113 411.8 379 67.0
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 8.3e-112 407.9 367 63.8
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.1e-111 407.5 390 63.6
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-111 407.5 390 63.6
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-110 403.3 291 74.9
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 3.5e-110 402.5 373 64.1
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.3e-109 400.6 363 64.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.5e-108 396.4 373 63.8
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.5e-108 395.2 376 63.0
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 8.0e-107 391.3 384 60.2
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 8.0e-107 391.3 400 58.2
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 8.0e-107 391.3 381 61.2
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 5.2e-106 388.7 424 60.4
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 8.8e-106 387.9 398 58.3
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.5e-105 387.1 388 59.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 7.5e-105 384.8 381 62.2
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 9.8e-105 384.4 375 60.5
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.3e-104 384.0 377 61.3
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.2e-104 383.3 385 60.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.2e-104 383.3 387 58.1
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 3.7e-104 382.5 396 58.3
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.0e-102 376.7 402 57.5
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 3.5e-102 375.9 379 59.6
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 5.9e-102 375.2 403 58.1
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 7.7e-102 374.8 351 62.4
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.0e-101 374.4 401 56.1
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.0e-101 374.4 380 58.4
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.7e-101 373.6 386 60.6
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.5e-100 369.8 423 56.7
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 4.3e-100 369.0 455 51.2
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-99 367.1 457 50.8
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.4e-98 364.0 472 50.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.8e-98 363.6 421 54.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.0e-98 362.8 419 54.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.0e-98 362.8 385 56.1
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 4.0e-98 362.5 454 52.0
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 5.2e-98 362.1 375 57.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.5e-97 358.2 410 54.6
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.9e-96 356.3 488 49.0
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.4e-95 353.2 424 54.7
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.4e-95 353.2 374 57.0
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 2.4e-95 353.2 371 58.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.6e-94 350.5 459 49.7
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.6e-94 350.5 484 49.8
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.0e-94 350.1 488 48.4
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 7.8e-94 348.2 460 49.6
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.3e-93 346.7 378 60.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 5.0e-93 345.5 383 56.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.1e-92 344.4 454 50.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.1e-92 344.4 454 50.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.5e-92 344.0 302 61.9
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 3.3e-92 342.8 302 61.6
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 4.3e-92 342.4 447 52.8
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.3e-92 341.7 363 57.6
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 7.3e-92 341.7 457 49.0
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.1e-91 340.1 331 58.6
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.3e-90 336.7 468 46.8
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.3e-90 336.7 390 55.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 8.9e-90 334.7 423 55.3
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.4e-89 332.4 372 54.8
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.9e-87 327.0 346 58.1
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.4e-87 326.6 386 53.4
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.2e-87 326.2 462 51.5
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 5.4e-87 325.5 427 53.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.5e-86 322.8 372 53.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 6.0e-86 322.0 481 46.2
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.0e-85 321.2 389 55.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 5.0e-85 318.9 344 61.9
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.5e-84 317.4 357 55.5
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.5e-84 316.6 371 52.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 7.3e-84 315.1 347 55.0
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.2e-83 314.3 386 51.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 3.6e-83 312.8 383 52.5
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 5.2e-82 308.9 392 52.3
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 8.3e-80 301.6 335 54.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 5.4e-79 298.9 369 53.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 8.6e-77 291.6 464 45.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.5e-76 290.0 399 49.9
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.6e-75 286.2 348 53.2
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 7.6e-73 278.5 368 59.2
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.2e-72 276.9 336 50.6
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.0e-69 268.1 330 52.1
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 6.6e-69 265.4 289 58.5
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.1e-66 258.1 368 46.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.4e-65 253.1 399 46.4
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 9.9e-65 251.5 276 56.9
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 2.3e-61 240.4 259 57.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.5e-60 236.9 442 39.8
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 6.2e-59 232.3 424 41.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.1e-58 231.5 280 52.1
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 5.4e-55 219.2 355 44.2
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.2e-54 218.0 376 43.4
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.8e-51 206.8 314 47.8
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 7.6e-49 198.7 365 43.3
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 6.0e-46 189.1 129 76.7
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 9.6e-36 155.2 333 38.4
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.5e-33 147.9 384 36.5
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.8e-32 143.3 157 55.4
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.1e-28 131.7 76 88.2
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 8.2e-27 125.6 97 70.1
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 6.5e-24 115.9 141 47.5
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.4e-23 112.1 71 76.1
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.6e-22 110.2 73 71.2
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.7e-21 105.9 83 71.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 6.7e-21 105.9 64 79.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 8.8e-21 105.5 64 78.1
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.4e-20 103.2 257 34.6
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 5.7e-20 102.8 354 31.9
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.8e-18 97.8 83 61.4
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.1e-18 96.7 58 79.3
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.5e-17 94.7 59 74.6
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.6e-14 83.6 163 40.5
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 3.6e-14 83.6 197 34.5
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.8e-13 81.3 74 55.4
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.7e-09 65.9 53 66.0
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.7e-09 65.9 53 66.0
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.7e-09 65.9 53 66.0
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.7e-09 65.9 53 66.0
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.0e-08 65.5 53 66.0
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.7e-08 64.7 53 64.2
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.2e-08 64.3 53 64.2
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.2e-07 60.5 53 62.3
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.2e-07 60.1 36 77.8
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 5.5e-07 59.7 247 34.0
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 3.6e-06 57.0 113 38.9


User provided reference genes

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