Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.5e-209 732.6 386 100.0
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 7.6e-185 650.6 387 88.1
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.8e-176 621.7 388 84.8
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.7e-174 615.5 388 82.2
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 7.9e-174 614.0 388 82.5
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.9e-174 614.0 388 84.5
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.5e-172 609.8 387 81.7
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 5.7e-172 607.8 388 82.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 3.7e-171 605.1 388 81.4
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.6e-169 599.0 388 82.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.4e-169 598.6 388 80.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.7e-168 596.3 386 80.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 2.5e-167 592.4 388 78.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 5.5e-167 591.3 388 79.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 5.5e-167 591.3 388 78.9
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 7.2e-167 590.9 406 78.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.2e-166 590.1 388 78.9
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 2.7e-166 589.0 388 79.1
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.3e-165 586.6 388 78.4
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.3e-165 586.6 388 78.4
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.3e-165 585.9 388 78.4
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.0e-165 585.5 388 78.1
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.6e-163 579.7 387 77.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 4.8e-163 578.2 384 77.3
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.3e-163 577.8 387 77.3
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.8e-162 576.2 386 77.5
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 3.1e-162 575.5 386 78.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.2e-161 573.5 384 77.1
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.5e-161 573.2 388 77.3
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.5e-161 573.2 389 77.6
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.0e-161 572.8 384 76.6
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.4e-161 572.0 388 76.5
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.4e-161 572.0 384 78.9
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.7e-160 569.7 383 77.5
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.9e-160 568.9 389 76.9
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 3.8e-160 568.5 389 76.9
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 6.5e-160 567.8 388 76.8
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.4e-159 566.6 385 76.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.2e-159 565.5 384 75.5
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.5e-159 564.7 386 76.2
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.2e-158 563.5 383 76.5
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.1e-158 561.2 388 76.3
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.0e-157 560.5 376 77.1
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.8e-157 559.7 390 75.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-157 559.7 388 75.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.3e-157 559.3 388 75.8
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 3.9e-157 558.5 382 75.7
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 3.9e-157 558.5 387 75.5
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 5.1e-157 558.1 393 76.1
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 8.8e-157 557.4 389 76.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-156 557.0 389 75.1
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.5e-156 556.6 383 77.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.0e-156 556.2 388 74.2
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.6e-156 555.8 388 75.8
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.6e-156 555.8 387 75.7
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.6e-156 555.8 387 75.7
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.3e-155 553.5 389 75.1
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.7e-155 553.1 385 74.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.7e-155 553.1 387 75.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.7e-155 553.1 388 74.7
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 8.2e-155 550.8 387 75.2
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.8e-154 549.7 387 74.7
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.4e-154 549.3 389 74.0
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.1e-154 548.5 382 75.1
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 6.9e-154 547.7 390 75.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.2e-153 547.0 387 74.2
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.9e-153 544.7 420 70.5
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.3e-152 543.5 386 72.8
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.8e-152 542.0 420 70.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 8.5e-152 540.8 388 75.0
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.1e-151 540.4 387 72.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.2e-151 538.9 394 71.8
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.2e-151 537.7 420 70.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-150 537.0 420 69.8
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.1e-150 536.2 389 72.0
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.8e-149 533.1 388 74.2
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 8.8e-149 530.8 414 70.5
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-148 530.4 387 71.8
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 3.3e-148 528.9 387 70.8
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.4e-148 528.5 350 78.9
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 9.7e-148 527.3 386 71.8
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 8.2e-147 524.2 386 72.5
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.1e-146 521.9 384 71.4
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 9.1e-146 520.8 385 72.2
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.5e-145 518.5 385 70.9
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 7.7e-145 517.7 385 69.9
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.0e-144 517.3 349 75.9
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.2e-144 516.2 384 70.6
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.2e-144 516.2 384 70.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.2e-144 516.2 386 71.5
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 3.8e-144 515.4 385 70.4
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.8e-144 515.4 392 70.4
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.0e-144 515.0 386 70.5
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 8.5e-144 514.2 386 70.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 8.5e-144 514.2 389 71.5
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.9e-143 513.1 386 70.2
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.9e-143 513.1 386 70.2
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.5e-140 503.4 387 67.7
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.7e-140 501.5 349 75.1
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 9.7e-140 500.7 387 67.7
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.7e-139 500.0 385 69.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.7e-139 500.0 387 67.4
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.8e-139 499.2 385 69.6
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.7e-139 498.8 351 74.9
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.7e-139 498.8 385 69.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.8e-138 496.5 348 75.6
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 7.0e-138 494.6 336 75.3
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.2e-137 493.8 388 68.6
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 3.5e-137 492.3 385 68.3
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.0e-133 480.7 381 68.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.3e-133 479.6 389 67.9
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.4e-130 469.5 386 66.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.0e-125 452.6 394 61.4
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.2e-124 450.7 400 61.0
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.4e-124 449.1 388 62.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 3.7e-123 445.7 396 62.1
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.1e-122 442.6 387 62.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.2e-121 440.7 398 61.3
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.6e-121 440.3 392 58.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.6e-119 431.8 377 59.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.0e-117 427.6 387 61.5
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.9e-111 406.8 387 59.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 4.4e-108 395.6 297 65.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.8e-100 368.6 270 71.1
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 4.6e-97 359.0 414 50.7
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 3.1e-85 319.7 438 43.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 2.2e-83 313.5 304 60.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 6.4e-83 312.0 368 47.8
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.4e-82 310.8 224 71.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.3e-79 299.7 264 59.8
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.8e-76 288.9 385 44.9
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.3e-64 250.4 467 37.7
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.0e-60 237.3 167 73.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 9.7e-55 218.4 244 50.4
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.2e-54 217.2 152 78.9
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.8e-54 216.9 142 78.9
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 6.9e-45 185.7 128 75.8
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.8e-38 162.9 169 58.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.7e-35 154.5 394 30.2
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 3.2e-34 150.2 89 85.4
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 8.2e-30 135.6 149 54.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 4.1e-29 133.3 166 47.0
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.5e-28 130.2 108 63.0
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.9e-27 127.1 79 78.5
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 2.9e-27 127.1 155 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.7e-25 120.6 213 37.6
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-24 117.9 138 53.6
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.7e-23 112.8 120 56.7
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-20 104.8 97 58.8
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-18 98.2 80 63.8
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.9e-18 97.8 125 53.6
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-17 95.1 126 51.6
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.7e-17 94.0 75 61.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 8.3e-14 82.4 124 47.6
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 7.0e-13 79.3 105 41.0
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.0e-12 77.8 106 43.4
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.0e-11 75.5 47 70.2
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.9e-11 73.9 51 66.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 4.2e-10 70.1 95 48.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 9.5e-10 68.9 40 87.5
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.6e-09 68.2 99 49.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.1e-09 67.8 40 85.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 3.0e-08 63.9 36 86.1
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 5.7e-07 59.7 44 68.2
Medtr2g030260 Medicago truncatula HOM05D004239 ORTHO05D005191 9.8e-07 58.9 49 67.3
CBR_g19142 Chara braunii HOM05D007151 ORTHO05D009056 2.2e-06 57.8 94 33.0
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 3.7e-06 57.0 44 63.6


User provided reference genes

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