Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 4.0e-159 564.7 280 100.0
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 2.9e-109 399.1 280 68.6
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.6e-107 393.3 273 69.6
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 2.4e-103 379.4 257 69.6
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.2e-102 377.1 259 69.5
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 2.0e-102 376.3 280 65.4
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 2.6e-102 375.9 259 69.1
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.4e-100 370.2 260 66.5
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 1.4e-100 370.2 283 63.6
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 5.5e-100 368.2 257 67.3
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 1.9e-97 359.8 254 67.3
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.9e-97 359.8 259 66.4
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 9.7e-97 357.5 259 65.3
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 3.7e-96 355.5 257 65.4
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 6.3e-96 354.8 259 63.7
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 4.1e-95 352.1 261 64.0
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 5.3e-95 351.7 255 65.5
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 1.2e-94 350.5 255 63.9
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.2e-94 350.5 255 63.5
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 2.0e-94 349.7 255 63.5
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 5.9e-94 348.2 258 66.7
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 7.7e-94 347.8 251 65.3
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 2.9e-93 345.9 251 64.5
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 2.9e-93 345.9 261 62.5
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.1e-92 344.0 257 63.8
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.1e-92 344.0 254 65.7
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 5.5e-92 341.7 259 63.3
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 7.2e-92 341.3 260 65.0
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 7.2e-92 341.3 258 59.3
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.2e-91 340.5 256 64.1
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.6e-91 340.1 253 66.0
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.6e-91 340.1 253 66.0
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 2.1e-91 339.7 256 64.1
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 4.6e-91 338.6 269 61.3
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 6.1e-91 338.2 253 65.6
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.0e-90 337.4 253 65.2
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.4e-90 337.0 264 62.9
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 2.3e-90 336.3 252 62.3
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 2.0e-89 333.2 256 61.7
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.0e-89 333.2 260 63.5
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 2.5e-89 332.8 262 61.8
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 3.3e-89 332.4 259 61.0
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 3.7e-88 328.9 254 61.8
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 3.7e-88 328.9 261 59.4
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 6.3e-88 328.2 258 59.3
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.4e-87 327.0 251 62.2
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 2.4e-87 326.2 259 57.9
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 3.1e-87 325.9 251 61.4
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 2.0e-86 323.2 256 61.3
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 2.6e-86 322.8 257 59.1
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 4.5e-86 322.0 262 56.9
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 2.9e-85 319.3 251 61.0
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 6.5e-85 318.2 258 59.7
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 8.5e-85 317.8 239 65.3
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 5.5e-84 315.1 260 58.5
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.5e-84 315.1 265 58.9
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 7.2e-84 314.7 254 58.3
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 3.6e-83 312.4 258 57.4
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 1.0e-82 310.8 258 57.0
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 1.0e-82 310.8 259 58.7
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 1.4e-82 310.5 264 57.6
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.4e-82 310.5 255 57.6
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 1.8e-82 310.1 256 57.8
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 3.0e-82 309.3 263 54.4
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 3.0e-82 309.3 236 63.1
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 6.7e-82 308.1 257 56.4
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.5e-81 307.0 251 57.8
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 2.0e-81 306.6 257 61.9
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 2.0e-81 306.6 260 56.2
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 2.0e-81 306.6 262 57.6
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 7.4e-81 304.7 258 56.6
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.7e-80 303.5 260 54.2
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.7e-80 303.5 237 62.4
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 3.7e-80 302.4 257 55.3
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 6.3e-80 301.6 257 54.9
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 7.0e-79 298.1 253 52.6
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 9.1e-79 297.7 259 54.1
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 9.1e-79 297.7 259 56.0
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 9.1e-79 297.7 251 56.2
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-78 296.6 244 59.8
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 5.9e-78 295.0 243 58.8
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 5.9e-78 295.0 244 59.0
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-77 294.3 244 59.8
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 6.5e-77 291.6 260 56.2
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.1e-76 290.8 256 56.2
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 3.2e-76 289.3 259 52.5
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 3.6e-75 285.8 254 53.5
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 8.0e-75 284.6 280 50.4
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.4e-74 283.9 219 62.1
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 3.0e-74 282.7 239 59.0
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 7.0e-71 271.6 251 53.0
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 7.0e-71 271.6 247 55.1
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.6e-70 269.6 241 54.8
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 3.5e-70 269.2 257 54.1
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 4.0e-66 255.8 199 58.3
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.5e-60 237.3 216 50.0
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 5.5e-60 235.3 256 46.1
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 7.2e-60 235.0 161 68.9
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 1.6e-59 233.8 161 65.2
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 3.3e-52 209.5 211 51.7
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 5.5e-52 208.8 177 57.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 7.2e-52 208.4 264 41.7
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 6.1e-51 205.3 240 46.7
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 8.0e-51 204.9 212 47.6
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 2.0e-41 173.7 143 60.8
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 3.4e-41 172.9 199 43.7
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.9e-39 167.2 250 40.8
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 6.0e-38 162.2 199 47.2
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-37 161.0 244 38.9
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 3.0e-37 159.8 243 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 3.3e-36 156.4 232 37.5
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.6e-35 154.1 223 38.1
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 3.5e-30 136.3 78 73.1
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 7.8e-30 135.2 222 34.7
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 5.1e-29 132.5 161 42.9
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 1.5e-28 131.0 116 58.6
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 7.3e-28 128.6 131 51.9
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 4.0e-26 122.9 243 35.4
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 3.2e-23 113.2 107 53.3
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 4.6e-22 109.4 108 50.0
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-21 108.2 110 50.0
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.9e-15 87.4 59 69.5
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 3.5e-14 83.2 91 47.3
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 8.7e-13 78.6 128 35.2
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 2.8e-11 73.6 64 54.7
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 1.1e-10 71.6 259 26.3
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.2e-09 68.2 257 26.1
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 5.8e-09 65.9 262 28.2
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 1.3e-08 64.7 302 22.2
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.7e-08 64.3 256 26.6
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 6.4e-08 62.4 226 25.7
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 1.2e-06 58.2 264 22.7


User provided reference genes

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