Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 4.5e-161 571.2 296 100.0
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 1.9e-135 486.1 295 85.4
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 6.3e-131 471.1 296 82.4
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 1.1e-130 470.3 296 82.1
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 7.0e-130 467.6 296 82.1
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 2.0e-129 466.1 296 80.4
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 4.5e-129 464.9 296 81.8
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 2.9e-128 462.2 297 82.8
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 5.0e-128 461.5 296 82.1
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 8.6e-128 460.7 296 81.1
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 5.6e-127 458.0 297 81.1
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 9.5e-127 457.2 298 80.5
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 1.6e-126 456.4 296 78.7
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 1.6e-126 456.4 300 80.7
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 2.8e-126 455.7 299 80.3
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 2.8e-126 455.7 298 78.5
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 2.8e-126 455.7 297 80.5
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.7e-126 454.9 298 80.9
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 6.1e-126 454.5 298 80.9
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 8.0e-126 454.1 298 80.5
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.3e-125 452.6 298 80.5
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.3e-125 452.6 298 80.2
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 2.3e-125 452.6 297 79.8
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.0e-125 451.8 298 80.5
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.2e-125 451.4 298 80.2
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 1.2e-124 450.3 297 81.8
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 1.5e-124 449.9 297 77.4
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 2.0e-124 449.5 296 79.7
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 2.6e-124 449.1 299 79.6
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 3.4e-124 448.7 297 79.8
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 3.4e-124 448.7 296 78.4
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 4.4e-124 448.4 296 79.4
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 2.9e-123 445.7 298 80.9
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 4.9e-123 444.9 300 77.7
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 2.4e-122 442.6 298 78.5
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 5.4e-122 441.4 298 79.2
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 5.4e-122 441.4 296 77.0
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 1.7e-120 436.4 296 77.4
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 3.0e-120 435.6 297 77.8
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 3.9e-120 435.3 296 77.0
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 1.5e-119 433.3 296 76.4
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 2.5e-119 432.6 297 77.4
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 5.6e-119 431.4 298 76.8
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 5.6e-119 431.4 297 77.4
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 7.3e-119 431.0 296 76.7
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 3.6e-118 428.7 297 76.8
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 4.7e-118 428.3 296 76.7
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 6.2e-118 427.9 298 76.2
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 1.0e-117 427.2 298 76.2
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 1.8e-117 426.4 296 76.7
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 1.8e-117 426.4 296 76.4
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 2.3e-117 426.0 290 77.6
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 3.1e-117 425.6 296 76.7
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 4.0e-117 425.2 297 75.1
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 4.0e-117 425.2 296 76.7
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 1.2e-116 423.7 291 77.3
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 1.2e-116 423.7 296 77.0
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 1.5e-116 423.3 312 71.5
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 3.4e-116 422.2 296 75.7
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.4e-116 422.2 304 75.0
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 3.4e-116 422.2 302 74.8
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 9.8e-116 420.6 296 76.0
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 9.8e-116 420.6 297 75.1
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 2.2e-115 419.5 296 75.7
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 2.2e-115 419.5 293 75.1
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 3.7e-115 418.7 298 75.5
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 8.3e-115 417.5 297 76.1
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.4e-114 416.8 297 74.7
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 7.0e-114 414.5 293 75.8
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 1.7e-112 409.8 300 74.0
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 3.0e-112 409.1 302 73.5
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 3.0e-112 409.1 296 72.0
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 1.5e-111 406.8 300 72.0
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 1.9e-111 406.4 296 72.6
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 2.5e-111 406.0 297 72.1
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 9.5e-111 404.1 298 71.1
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 2.1e-110 402.9 298 72.8
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 3.6e-110 402.1 296 73.0
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 3.6e-110 402.1 296 72.3
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 4.7e-110 401.7 297 71.7
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 6.2e-110 401.4 296 73.0
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 1.4e-109 400.2 299 72.9
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.1e-109 399.1 299 71.2
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 4.0e-109 398.7 299 71.6
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 6.8e-109 397.9 298 72.1
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 8.9e-109 397.5 298 71.5
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.6e-108 396.0 299 70.6
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 4.4e-108 395.2 296 71.3
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 2.9e-107 392.5 296 70.6
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 3.7e-107 392.1 296 70.6
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 3.7e-107 392.1 296 70.6
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 3.7e-107 392.1 296 70.6
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 6.4e-107 391.3 300 70.0
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 6.4e-107 391.3 300 70.0
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 1.2e-105 387.1 297 69.7
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 1.6e-105 386.7 229 84.7
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 7.8e-105 384.4 272 74.3
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 1.0e-104 384.0 302 70.2
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 5.1e-104 381.7 236 80.5
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 8.6e-104 380.9 239 82.0
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 3.4e-100 369.0 299 67.2
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 2.9e-99 365.9 225 83.6
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 1.6e-97 360.1 234 78.2
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 7.8e-97 357.8 288 68.1
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 3.4e-92 342.4 223 78.0
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-90 336.3 250 71.6
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 5.1e-88 328.6 303 62.4
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.5e-87 326.2 226 73.9
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 3.3e-87 325.9 282 64.5
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 4.3e-87 325.5 227 72.7
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 2.7e-81 306.2 232 69.4
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 3.5e-81 305.8 236 67.8
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 1.4e-77 293.9 213 72.8
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 4.2e-74 282.3 226 64.6
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 3.3e-71 272.7 203 67.0
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 6.9e-61 238.4 145 80.7
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.7e-59 233.8 137 80.3
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 5.5e-50 202.2 222 46.8
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 1.4e-45 187.6 202 46.5
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 1.8e-40 170.6 218 42.7
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 1.0e-35 154.8 89 89.9
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 1.2e-33 147.9 83 89.2
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.6e-33 147.5 86 82.6
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 2.7e-25 120.2 64 87.5
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 2.3e-11 73.9 87 56.3


User provided reference genes

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