Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 3.7e-258 894.8 624 100.0
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 9.0e-103 378.6 862 44.1
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 2.5e-97 360.5 592 48.0
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.1e-92 345.1 635 53.5
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 3.3e-89 333.6 634 40.4
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.2e-86 325.1 634 53.5
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 5.5e-84 316.2 601 38.6
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 2.1e-83 314.3 634 41.6
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 9.7e-81 305.4 634 44.3
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 5.3e-79 299.7 634 38.8
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 5.9e-78 296.2 635 48.0
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.0e-77 295.4 627 43.2
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.3e-71 273.1 620 35.0
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 5.9e-70 269.6 582 45.2
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.5e-65 255.0 627 39.7
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.6e-65 254.2 652 39.4
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 9.1e-63 245.7 620 34.0
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 3.6e-59 233.8 668 40.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.4e-58 231.9 634 41.2
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.8e-58 231.5 259 49.8
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 8.8e-58 229.2 635 39.7
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 2.0e-57 228.0 755 34.7
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 2.6e-57 227.6 668 39.1
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 5.7e-57 226.5 638 32.4
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.4e-55 221.1 641 37.1
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 3.1e-55 220.7 596 29.7
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 4.1e-55 220.3 625 39.8
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.7e-54 217.6 666 35.4
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.5e-54 217.2 655 42.9
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.5e-54 217.2 643 38.6
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 4.5e-54 216.9 638 35.6
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.5e-52 211.1 636 32.9
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 7.3e-52 209.5 634 43.1
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 8.0e-51 206.1 625 34.9
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 4.0e-50 203.8 637 35.5
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 5.2e-50 203.4 910 28.2
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 8.9e-50 202.6 623 27.9
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.2e-49 202.2 619 35.9
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.5e-49 201.8 634 41.8
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.7e-48 198.4 624 36.2
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 3.7e-48 197.2 660 27.1
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 8.3e-48 196.1 636 33.5
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 8.3e-48 196.1 629 31.3
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 8.3e-48 196.1 629 31.3
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 4.1e-47 193.7 643 34.1
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 5.4e-47 193.4 632 32.9
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 5.4e-47 193.4 628 30.7
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 5.4e-47 193.4 624 30.4
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.0e-46 191.4 666 39.6
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 4.6e-46 190.3 632 38.4
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.7e-45 188.3 611 33.9
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.7e-45 188.3 666 41.4
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.1e-44 185.7 590 40.8
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 4.3e-44 183.7 630 28.1
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.6e-43 181.8 634 27.1
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.6e-43 181.8 601 30.0
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 4.7e-43 180.3 639 36.9
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.7e-40 171.8 638 32.3
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 1.1e-39 169.1 638 32.8
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 1.9e-39 168.3 638 38.9
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.2e-39 167.5 594 35.5
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 3.5e-38 164.1 262 38.9
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 6.0e-38 163.3 590 38.5
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 6.0e-38 163.3 657 26.5
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 7.8e-38 162.9 627 30.9
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 3.0e-37 161.0 595 32.9
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.0e-37 160.2 590 38.8
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 1.9e-36 158.3 773 28.3
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 3.3e-36 157.5 627 37.0
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.3e-36 157.5 634 35.0
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.3e-36 157.5 590 38.8
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 5.6e-36 156.8 596 24.5
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.8e-35 154.5 756 27.1
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.1e-34 152.5 639 32.1
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.4e-34 152.1 652 32.8
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.4e-34 152.1 635 29.1
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.8e-34 151.8 672 28.7
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.8e-34 149.8 590 27.8
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 2.0e-33 148.3 624 32.5
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 3.7e-32 144.1 695 27.5
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.1e-31 142.5 634 35.5
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.4e-31 142.1 651 29.5
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 5.4e-31 140.2 237 38.4
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 1.0e-29 136.0 631 29.2
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.5e-28 132.1 654 26.5
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 2.5e-28 131.3 225 36.9
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 3.3e-28 131.0 629 33.1
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 5.6e-28 130.2 616 24.2
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.7e-27 127.1 615 26.5
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 6.2e-27 126.7 634 25.4
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 1.4e-26 125.6 636 40.7
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 3.1e-26 124.4 656 27.9
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.2e-26 123.6 246 33.3
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 2.2e-24 118.2 609 35.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 3.2e-23 114.4 623 27.1
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.1e-23 114.0 644 31.1
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.6e-22 112.1 257 32.7
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 7.8e-22 109.8 626 23.6
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.0e-21 109.4 639 38.3
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 3.9e-21 107.5 703 28.3
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.9e-20 105.1 647 31.1
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 3.3e-20 104.4 261 30.7
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 3.3e-20 104.4 261 30.7
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 3.6e-19 100.9 156 42.9
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 4.7e-19 100.5 147 42.2
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 5.2e-18 97.1 711 27.7
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 6.8e-18 96.7 167 37.7
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.5e-17 95.5 269 29.7
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 2.0e-17 95.1 616 26.3
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.0e-17 95.1 127 42.5
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.6e-17 94.7 227 30.4
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 2.6e-17 94.7 136 43.4
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 2.6e-17 94.7 620 29.2
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 6.4e-16 90.1 214 33.6
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 8.4e-16 89.7 636 27.0
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.1e-15 89.4 93 55.9
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.4e-15 89.0 192 33.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 1.4e-15 89.0 591 26.2
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.4e-15 89.0 183 38.3
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 3.2e-15 87.8 228 31.6
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 9.3e-15 86.3 268 29.5
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.6e-14 85.5 623 32.1
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.1e-14 85.1 123 45.5
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 4.6e-14 84.0 756 25.1
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 6.0e-14 83.6 695 25.0
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 7.8e-14 83.2 634 21.9
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 7.3e-12 76.6 151 34.4
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 8.1e-11 73.2 246 26.0
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 3.1e-10 71.2 107 42.1
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 5.3e-10 70.5 234 30.8
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 5.3e-10 70.5 234 30.8
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 5.3e-10 70.5 143 34.3
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 9.0e-10 69.7 146 35.6
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 2.0e-09 68.6 263 27.0
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 2.6e-09 68.2 132 34.8
CDE02G2189 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.5e-06 57.8 264 23.1


User provided reference genes

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