Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G161401 Manihot esculenta HOM05D003567 ORTHO05D004117 2.1e-58 228.8 112 100.0
Dinv40231 Davidia involucrata HOM05D003567 ORTHO05D004117 2.0e-24 115.9 99 58.6
GSVIVG01022012001 Vitis vinifera HOM05D003567 ORTHO05D004117 5.7e-24 114.4 106 51.9
Cpa.g.sc84.116 Carica papaya HOM05D003567 ORTHO05D004117 4.8e-23 111.3 96 54.2
TAR365G0081 Trochodendron aralioides HOM05D003567 ORTHO05D004117 8.2e-23 110.5 98 55.1
Lj9A677G34 Lonicera japonica HOM05D003567 ORTHO05D004117 4.1e-22 108.2 98 53.1
Aqoxy2G03162 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 2.6e-21 105.5 98 53.1
Nitab4.5_0006272g0050 Nicotiana tabacum HOM05D003567 ORTHO05D004117 5.9e-21 104.4 105 45.7
Duzib106G0722 Durio zibethinus HOM05D003567 ORTHO05D004117 1.3e-20 103.2 99 51.5
PGR031G3379 Punica granatum HOM05D003567 ORTHO05D004117 6.5e-20 100.9 97 49.5
Aa31LG2G12110 Aethionema arabicum HOM05D003567 ORTHO05D004117 5.5e-19 97.8 97 48.5
Cc02_g32780 Coffea canephora HOM05D003567 ORTHO05D004117 5.5e-19 97.8 99 48.5
ECA246G0369 Erigeron canadensis HOM05D003567 ORTHO05D004117 1.2e-18 96.7 95 49.5
Nn3g21221 Nelumbo nucifera HOM05D003567 ORTHO05D004117 2.7e-18 95.5 94 51.1
BcaB04g20139 Brassica carinata HOM05D003567 ORTHO05D004117 4.7e-18 94.7 98 45.9
Peaxi162Scf00071g00838 Petunia axillaris HOM05D003567 ORTHO05D004117 1.0e-17 93.6 106 42.5
Nn3g21224 Nelumbo nucifera HOM05D003567 ORTHO05D004117 1.8e-17 92.8 98 49.0
Solyc08g042140.3 Solanum lycopersicum HOM05D003567 ORTHO05D004117 2.3e-17 92.4 106 40.6
unitig_578.g16416 Utricularia gibba HOM05D003567 ORTHO05D004117 2.3e-17 92.4 97 46.4
Solyc02g090020.4 Solanum lycopersicum HOM05D003567 ORTHO05D004117 3.0e-17 92.0 98 48.0
Sopen02g034720 Solanum pennellii HOM05D003567 ORTHO05D004117 3.0e-17 92.0 98 48.0
THA.LOC104805845 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 3.0e-17 92.0 101 47.5
ATR0487G007 Amborella trichopoda HOM05D003567 ORTHO05D004117 5.2e-17 91.3 99 46.5
BcaC05g25942 Brassica carinata HOM05D003567 ORTHO05D004117 6.7e-17 90.9 106 44.3
Eucgr.H04431 Eucalyptus grandis HOM05D003567 ORTHO05D004117 6.7e-17 90.9 99 47.5
FAN14G3462 Fragaria x ananassa HOM05D003567 ORTHO05D004117 8.8e-17 90.5 99 46.5
PGSC0003DMG400010083 Solanum tuberosum HOM05D003567 ORTHO05D004117 8.8e-17 90.5 98 46.9
AL1G65120 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.2e-16 90.1 99 45.5
CSS0000473 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 1.2e-16 90.1 93 49.5
CSS0010999 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 1.2e-16 90.1 93 49.5
Eucgr.H04432 Eucalyptus grandis HOM05D003567 ORTHO05D004117 1.2e-16 90.1 93 45.2
FvH4_6g04940 Fragaria vesca HOM05D003567 ORTHO05D004117 1.2e-16 90.1 99 46.5
PGR031G0264 Punica granatum HOM05D003567 ORTHO05D004117 1.2e-16 90.1 98 48.0
Rhsim05G0146400 Rhododendron simsii HOM05D003567 ORTHO05D004117 1.2e-16 90.1 98 45.9
Sopen08g012750 Solanum pennellii HOM05D003567 ORTHO05D004117 1.2e-16 90.1 100 42.0
AT1G54680 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 1.5e-16 89.7 112 40.2
Hund07025 Selenicereus undatus HOM05D003567 ORTHO05D004117 1.5e-16 89.7 97 45.4
TAR362G0113 Trochodendron aralioides HOM05D003567 ORTHO05D004117 1.5e-16 89.7 98 44.9
Peaxi162Scf00338g00312 Petunia axillaris HOM05D003567 ORTHO05D004117 2.0e-16 89.4 98 46.9
BcaC09g49610 Brassica carinata HOM05D003567 ORTHO05D004117 2.6e-16 89.0 93 45.2
C01p34500 Brassica napus HOM05D003567 ORTHO05D004117 2.6e-16 89.0 93 45.2
BolC1t03421H Brassica oleracea HOM05D003567 ORTHO05D004117 2.6e-16 89.0 93 45.2
BraA01t02844Z Brassica rapa HOM05D003567 ORTHO05D004117 2.6e-16 89.0 93 45.2
Migut.L01512 Erythranthe guttata HOM05D003567 ORTHO05D004117 2.6e-16 89.0 94 46.8
Lj9A677T42 Lonicera japonica HOM05D003567 ORTHO05D004117 2.6e-16 89.0 123 40.7
Sed0017789 Sechium edule HOM05D003567 ORTHO05D004117 2.6e-16 89.0 98 45.9
ClCG03G016600 Citrullus lanatus HOM05D003567 ORTHO05D004117 3.3e-16 88.6 98 44.9
Thhalv10023619m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 3.3e-16 88.6 99 44.4
Nitab4.5_0008257g0040 Nicotiana tabacum HOM05D003567 ORTHO05D004117 3.3e-16 88.6 98 46.9
PSO302G0249 Papaver somniferum HOM05D003567 ORTHO05D004117 3.3e-16 88.6 111 41.4
SpUn0002_0170 Schrenkiella parvula HOM05D003567 ORTHO05D004117 3.3e-16 88.6 93 45.2
Carub.0002s0892 Capsella rubella HOM05D003567 ORTHO05D004117 4.4e-16 88.2 93 45.2
Ca_09384_v3 Cicer arietinum L. HOM05D003567 ORTHO05D004117 4.4e-16 88.2 99 43.4
Sabra13G0029300 Salix brachista HOM05D003567 ORTHO05D004117 4.4e-16 88.2 99 46.5
arahy.Tifrunner.gnm1.ann1.86SZEE Arachis hypogaea HOM05D003567 ORTHO05D004117 5.7e-16 87.8 98 44.9
arahy.Tifrunner.gnm1.ann1.BBX3WJ Arachis hypogaea HOM05D003567 ORTHO05D004117 5.7e-16 87.8 98 44.9
AUR62005073 Chenopodium quinoa HOM05D003567 ORTHO05D004117 5.7e-16 87.8 97 43.3
SGA_v2.0_scaffold21G09407 Striga asiatica HOM05D003567 ORTHO05D004117 5.7e-16 87.8 99 45.5
Aqoxy2G03161 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 7.5e-16 87.4 98 48.0
Cc02_g32800 Coffea canephora HOM05D003567 ORTHO05D004117 9.7e-16 87.0 103 44.7
RcHm_v2.0_Chr3g0453431 Rosa chinensis HOM05D003567 ORTHO05D004117 9.7e-16 87.0 98 43.9
CAN.G836.16 Capsicum annuum HOM05D003567 ORTHO05D004117 1.3e-15 86.7 98 45.9
Psat3g009280 Pisum sativum HOM05D003567 ORTHO05D004117 1.3e-15 86.7 94 46.8
Sed0008957 Sechium edule HOM05D003567 ORTHO05D004117 1.3e-15 86.7 99 41.4
Gohir.D11G270600 Gossypium hirsutum HOM05D003567 ORTHO05D004117 1.7e-15 86.3 99 46.5
Gorai.007G291100 Gossypium raimondii HOM05D003567 ORTHO05D004117 1.7e-15 86.3 99 46.5
COL.COLO4_13563 Corchorus olitorius HOM05D003567 ORTHO05D004117 2.2e-15 85.9 99 45.5
MELO3C029313.2 Cucumis melo HOM05D003567 ORTHO05D004117 2.2e-15 85.9 99 44.4
Lalb_Chr18g0045341 Lupinus albus HOM05D003567 ORTHO05D004117 2.2e-15 85.9 94 45.7
PSO170G3637 Papaver somniferum HOM05D003567 ORTHO05D004117 2.2e-15 85.9 98 44.9
Sc06g0003450 Simmondsia chinensis HOM05D003567 ORTHO05D004117 2.2e-15 85.9 97 44.3
Cpa.g.sc84.115 Carica papaya HOM05D003567 ORTHO05D004117 3.7e-15 85.1 99 46.5
CsaV3_1G039400 Cucumis sativus L. HOM05D003567 ORTHO05D004117 3.7e-15 85.1 92 44.6
HanXRQChr12g0379821 Helianthus annuus HOM05D003567 ORTHO05D004117 3.7e-15 85.1 94 44.7
MD04G1212700 Malus domestica HOM05D003567 ORTHO05D004117 3.7e-15 85.1 99 43.4
PSO170G0922 Papaver somniferum HOM05D003567 ORTHO05D004117 3.7e-15 85.1 97 44.3
SalBow1G3301 Salvia bowleyana HOM05D003567 ORTHO05D004117 3.7e-15 85.1 94 45.7
TPR.G21793 Trifolium pratense HOM05D003567 ORTHO05D004117 3.7e-15 85.1 94 45.7
EL10Ac4g09285 Beta vulgaris HOM05D003567 ORTHO05D004117 4.8e-15 84.7 97 42.3
CAN.G566.56 Capsicum annuum HOM05D003567 ORTHO05D004117 4.8e-15 84.7 103 40.8
Cfa006520 Carpinus fangiana HOM05D003567 ORTHO05D004117 4.8e-15 84.7 103 43.7
Medtr7g114070 Medicago truncatula HOM05D003567 ORTHO05D004117 4.8e-15 84.7 94 45.7
AUR62000902 Chenopodium quinoa HOM05D003567 ORTHO05D004117 6.3e-15 84.3 99 41.4
DCAR_016974 Daucus carota HOM05D003567 ORTHO05D004117 6.3e-15 84.3 98 42.9
Manes.08G124900 Manihot esculenta HOM05D003567 ORTHO05D004117 6.3e-15 84.3 99 43.4
VMungo0540G1876 Vigna mungo HOM05D003567 ORTHO05D004117 6.3e-15 84.3 99 43.4
Lj1g0016651 Lotus japonicus HOM05D003567 ORTHO05D004117 8.2e-15 84.0 94 44.7
Os01g0382700 Oryza sativa ssp. japonica HOM05D003567 ORTHO05D004117 8.2e-15 84.0 103 45.6
Phvul.006G095900 Phaseolus vulgaris HOM05D003567 ORTHO05D004117 8.2e-15 84.0 94 45.7
Potri.013G029000 Populus trichocarpa HOM05D003567 ORTHO05D004117 8.2e-15 84.0 99 44.4
THA.LOC104802813 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 8.2e-15 84.0 98 43.9
Aa31LG11G9050 Aethionema arabicum HOM05D003567 ORTHO05D004117 1.1e-14 83.6 99 44.4
Ciclev10001775m.g Citrus clementina HOM05D003567 ORTHO05D004117 1.1e-14 83.6 94 45.7
Haze_04266 Corylus avellana HOM05D003567 ORTHO05D004117 1.4e-14 83.2 99 44.4
PSO170G0105 Papaver somniferum HOM05D003567 ORTHO05D004117 1.4e-14 83.2 98 41.8
Thecc.05G296900 Theobroma cacao HOM05D003567 ORTHO05D004117 1.4e-14 83.2 99 43.4
GSVIVG01022011001 Vitis vinifera HOM05D003567 ORTHO05D004117 1.4e-14 83.2 98 45.9
Atru.chr2.536 Acer truncatum HOM05D003567 ORTHO05D004117 1.8e-14 82.8 99 43.4
CANSAT54G0395 Cannabis sativa HOM05D003567 ORTHO05D004117 1.8e-14 82.8 103 40.8
CARHR055820 Cardamine hirsuta HOM05D003567 ORTHO05D004117 2.4e-14 82.4 99 41.4
CiPaw.08G174300 Carya illinoinensis HOM05D003567 ORTHO05D004117 2.4e-14 82.4 98 42.9
ClCG03G016590 Citrullus lanatus HOM05D003567 ORTHO05D004117 2.4e-14 82.4 90 46.7
Glyma.03G241900 Glycine max HOM05D003567 ORTHO05D004117 2.4e-14 82.4 94 44.7
ECA246G1301 Erigeron canadensis HOM05D003567 ORTHO05D004117 3.1e-14 82.0 98 43.9
QL03p002916 Quercus lobata HOM05D003567 ORTHO05D004117 3.1e-14 82.0 98 42.9
HanXRQChr16g0512311 Helianthus annuus HOM05D003567 ORTHO05D004117 4.1e-14 81.6 98 42.9
Lsat_1_v5_gn_5_38921 Lactuca sativa HOM05D003567 ORTHO05D004117 4.1e-14 81.6 93 44.1
PSO302G0281 Papaver somniferum HOM05D003567 ORTHO05D004117 7.0e-14 80.9 98 40.8
QL03p003527 Quercus lobata HOM05D003567 ORTHO05D004117 7.0e-14 80.9 94 43.6
A09p05230 Brassica napus HOM05D003567 ORTHO05D004117 9.1e-14 80.5 98 42.9
C09p05690 Brassica napus HOM05D003567 ORTHO05D004117 9.1e-14 80.5 98 42.9
BolC9t53498H Brassica oleracea HOM05D003567 ORTHO05D004117 9.1e-14 80.5 98 42.9
Duzib177G1144 Durio zibethinus HOM05D003567 ORTHO05D004117 9.1e-14 80.5 99 42.4
BraA09t36162Z Brassica rapa HOM05D003567 ORTHO05D004117 1.2e-13 80.1 98 41.8
Glyma.19G239300 Glycine max HOM05D003567 ORTHO05D004117 1.2e-13 80.1 94 42.6
Sp2g20530 Schrenkiella parvula HOM05D003567 ORTHO05D004117 1.2e-13 80.1 98 42.9
AL6G39790 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.6e-13 79.7 98 41.8
CARHR185910 Cardamine hirsuta HOM05D003567 ORTHO05D004117 1.6e-13 79.7 98 41.8
BcaB04g19661 Brassica carinata HOM05D003567 ORTHO05D004117 2.0e-13 79.3 98 41.8
CDE05G1895 Ceratophyllum demersum HOM05D003567 ORTHO05D004117 2.0e-13 79.3 93 44.1
Thhalv10004533m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 2.0e-13 79.3 98 42.9
AT5G27290 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 2.7e-13 79.0 98 41.8
SEGI_02572 Sequoiadendron giganteum HOM05D003567 ORTHO05D004117 2.7e-13 79.0 93 43.0
BcaB04g19664 Brassica carinata HOM05D003567 ORTHO05D004117 3.5e-13 78.6 98 41.8
BcaC04g23684 Brassica carinata HOM05D003567 ORTHO05D004117 3.5e-13 78.6 98 41.8
Carub.0006s2522 Capsella rubella HOM05D003567 ORTHO05D004117 3.5e-13 78.6 98 41.8
Oeu033946.2 Olea europaea HOM05D003567 ORTHO05D004117 3.5e-13 78.6 94 43.6
Nitab4.5_0000327g0090 Nicotiana tabacum HOM05D003567 ORTHO05D004117 4.5e-13 78.2 90 44.4
SGA_v2.0_scaffold21G09406 Striga asiatica HOM05D003567 ORTHO05D004117 5.9e-13 77.8 97 44.3
MBI10_g37183_MAGBIO Magnolia biondii HOM05D003567 ORTHO05D004117 7.7e-13 77.4 68 51.5
Oeu025239.1 Olea europaea HOM05D003567 ORTHO05D004117 1.0e-12 77.0 131 33.6
Migut.L01511 Erythranthe guttata HOM05D003567 ORTHO05D004117 1.7e-12 76.3 100 40.0
BcaC04g23687 Brassica carinata HOM05D003567 ORTHO05D004117 5.0e-12 74.7 98 41.8
vmacro19654 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 6.5e-12 74.3 67 53.7
SMO367G0890 Selaginella moellendorffii HOM05D003567 ORTHO05D004117 1.5e-11 73.2 95 43.2
AUR62026190 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.5e-11 72.4 97 40.2
Pp3c5_10750 Physcomitrium patens HOM05D003567 ORTHO05D004117 3.2e-11 72.0 99 42.4
AUR62043825 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.2e-10 70.1 66 48.5
DCAR_003305 Daucus carota HOM05D003567 ORTHO05D004117 1.6e-10 69.7 93 46.2
Lsat_1_v5_gn_5_38361 Lactuca sativa HOM05D003567 ORTHO05D004117 1.6e-10 69.7 63 49.2
MCO11G582 Micromonas commoda HOM05D003567 ORTHO05D004117 3.6e-10 68.6 94 38.3
AagrBONN_evm.TU.Sc2ySwM_344.4623 Anthoceros agrestis HOM05D003567 ORTHO05D004117 8.0e-10 67.4 86 43.0
Cre01.g055412 Chlamydomonas reinhardtii HOM05D003567 ORTHO05D004117 1.4e-09 66.6 99 35.4
Mapoly0059s0075 Marchantia polymorpha HOM05D003567 ORTHO05D004117 1.2e-08 63.5 93 36.6
PRCOL_00003025 Prasinoderma coloniale HOM05D003567 ORTHO05D004117 2.0e-08 62.8 100 36.0
CiPaw.08G175300 Carya illinoinensis HOM05D003567 ORTHO05D004117 2.6e-08 62.4 62 50.0
Duzib128G1838 Durio zibethinus HOM05D003567 ORTHO05D004117 5.7e-08 61.2 93 36.6
MELO3C015365.2 Cucumis melo HOM05D003567 ORTHO05D004117 7.5e-08 60.8 110 33.6
Actinidia30900 Actinidia chinensis HOM05D003567 ORTHO05D004117 2.2e-07 59.3 56 50.0
SalBow1G7230 Salvia bowleyana HOM05D003567 ORTHO05D004117 8.3e-07 57.4 67 41.8


User provided reference genes

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