Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 2333.1 1208 100.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1911.7 1211 81.1
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1900.2 1204 80.0
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1895.6 1213 79.7
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1874.4 1214 78.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1864.4 1209 78.9
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1860.9 1211 79.1
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1843.2 1212 77.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1842.0 1209 78.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1840.1 1210 77.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1839.7 1209 77.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1834.7 1209 77.1
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1829.7 1209 77.3
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1812.3 1217 76.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1807.7 1202 77.7
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1803.5 1214 75.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1803.1 1208 76.2
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1800.8 1166 78.6
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1797.3 1205 75.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1797.3 1210 76.0
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1791.5 1183 76.6
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1788.5 1209 76.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1782.7 1211 76.5
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1772.3 1207 75.6
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1771.5 1198 76.6
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1762.7 1210 73.1
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1761.1 1202 74.9
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1758.8 1205 74.4
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1750.7 1211 74.4
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1750.3 1211 74.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1743.4 1170 76.1
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1742.6 1211 73.9
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1740.3 1211 73.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1740.3 1207 74.3
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1739.5 1211 73.8
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1737.6 1208 74.3
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1736.1 1206 73.7
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1735.3 1211 73.7
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1732.6 1211 74.9
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1729.9 1211 72.3
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1729.1 1221 73.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1729.1 1210 73.3
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1709.9 1223 72.4
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1708.3 1208 72.5
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1703.7 1211 71.5
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1701.8 1210 72.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1698.3 1211 70.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1694.9 1205 72.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1694.5 1212 71.1
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1687.9 1202 72.4
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1684.5 1214 71.7
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1681.4 1203 70.7
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1209 70.2
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1669.1 1208 69.5
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1666.7 1208 69.5
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1664.4 1209 69.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1662.1 1209 69.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1661.0 1210 70.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1657.1 1204 70.7
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1655.6 1205 69.7
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1652.9 1211 69.2
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1647.9 1211 69.1
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1647.5 1208 70.3
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1647.1 1209 69.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1644.8 1204 70.8
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1640.9 1195 70.0
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1204 68.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1636.7 1203 70.6
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1202 70.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1620.1 1212 68.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1619.8 1208 68.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1618.2 1189 69.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1616.7 1210 69.2
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1615.9 1169 71.2
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1612.0 1212 67.7
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1213 68.8
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1609.7 1206 70.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1601.3 1189 68.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1597.8 1208 69.6
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1594.3 1179 69.1
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1587.0 1211 66.9
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1580.8 1124 72.4
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1580.1 1217 66.5
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1183 68.6
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1199 67.2
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 1200 66.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1549.3 1262 64.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1546.2 1208 66.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1540.8 1211 67.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1499.2 1211 64.7
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1474.9 1292 62.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1465.3 986 76.0
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1457.2 1140 66.1
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1452.6 1140 65.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1435.2 1027 71.1
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1433.7 1211 63.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1396.3 1199 60.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1387.5 1200 59.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1381.3 1178 60.8
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1329.7 1220 58.3
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1271.9 1051 63.7
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1224.9 959 67.7
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1215.7 893 68.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1181.0 827 73.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1169.5 836 73.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 8.3e-312 1073.9 1153 53.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.4e-269 933.7 1232 43.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.1e-269 932.6 1235 43.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.2e-268 930.6 1240 44.3
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-261 907.5 651 71.7
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.3e-259 900.6 1182 45.7
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.9e-250 870.2 1158 44.9
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.9e-246 856.3 1182 44.4
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.9e-245 853.6 1158 44.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 3.2e-237 826.2 1059 47.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.0e-235 819.7 1216 40.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.0e-223 780.4 795 53.2
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.3e-219 766.9 601 67.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 5.8e-207 725.7 1232 37.0
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.1e-200 703.4 570 63.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.5e-199 699.5 633 57.0
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.2e-185 654.1 539 62.5
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.3e-176 622.9 501 67.9
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.8e-174 616.7 416 75.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-154 552.0 488 58.2
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.3e-123 448.0 321 72.0
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.1e-112 410.6 296 72.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 4.9e-81 307.4 1356 24.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.3e-78 299.3 267 57.7
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.9e-77 295.4 210 70.5
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 9.7e-77 293.1 209 71.8
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.3e-68 266.2 187 74.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.2e-64 251.1 217 63.1
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.8e-51 209.1 477 31.2
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.2e-48 197.2 459 32.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.0e-41 176.8 109 80.7
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.5e-29 136.3 1170 20.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 9.2e-27 127.1 96 69.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.4e-21 108.6 82 67.1
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 4.9e-20 104.8 413 27.6
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.3e-16 92.0 90 55.6
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 8.9e-14 84.0 63 68.3
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-13 83.2 79 55.7
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 7.5e-13 80.9 73 56.2
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 4.9e-12 78.2 78 57.7
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 5.4e-11 74.7 76 50.0
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 7.0e-11 74.3 50 76.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 7.0e-11 74.3 50 76.0
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 7.0e-11 74.3 91 50.5
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.2e-10 73.6 69 55.1
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 1.2e-10 73.6 108 44.4
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.7e-10 72.4 68 54.4
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 3.5e-10 72.0 319 23.8
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.6e-10 71.6 182 28.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 6.0e-10 71.2 64 57.8
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 6.0e-10 71.2 169 37.9
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.7e-09 69.7 64 56.2
Aa31LG11G12580 Aethionema arabicum HOM05D002636 ORTHO05D003490 2.8e-07 62.4 222 27.0
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 8.1e-07 60.8 36 77.8
Sabra13G0031500 Salix brachista HOM05D004384 ORTHO05D349000 8.1e-07 60.8 34 88.2
Sabra13G0031700 Salix brachista HOM05D004384 ORTHO05D037489 1.4e-06 60.1 55 63.6


User provided reference genes

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