Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 5.0e-193 677.6 335 100.0
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 7.6e-157 557.4 336 81.8
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.2e-154 550.1 336 81.0
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.6e-154 548.1 336 80.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.5e-152 543.1 341 78.6
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 5.6e-152 541.2 342 78.1
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 9.6e-152 540.4 333 79.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.8e-151 538.9 333 79.3
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.5e-149 531.6 331 78.5
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 7.6e-149 530.8 334 79.3
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.5e-148 527.7 338 77.8
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.1e-147 526.9 341 77.7
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.4e-147 526.6 332 78.0
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.5e-147 525.8 341 76.8
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.2e-147 525.4 330 79.1
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 7.1e-147 524.2 333 79.0
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 9.3e-147 523.9 343 76.4
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.6e-146 521.5 332 77.7
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.1e-145 518.1 333 78.4
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 8.7e-145 517.3 337 75.7
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 7.4e-144 514.2 336 75.3
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 9.6e-144 513.8 330 76.7
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.3e-143 513.5 350 73.4
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 2.1e-143 512.7 341 74.5
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.8e-143 512.3 338 74.6
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 4.8e-143 511.5 330 76.7
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.4e-142 510.0 338 76.3
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.8e-142 509.6 337 75.7
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.8e-142 509.6 337 75.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.4e-142 509.2 332 75.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.1e-142 508.8 330 75.8
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 9.0e-142 507.3 331 74.6
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 9.0e-142 507.3 333 76.0
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.0e-141 506.1 325 75.4
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.0e-141 506.1 333 75.7
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 3.4e-141 505.4 333 76.0
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 5.9e-141 504.6 331 74.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 5.9e-141 504.6 331 74.3
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.9e-141 504.6 328 75.6
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.9e-141 504.6 328 75.6
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 7.6e-141 504.2 332 76.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.0e-140 503.8 332 76.2
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.7e-140 503.1 268 86.2
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.2e-140 502.7 331 74.0
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.2e-140 502.7 326 76.4
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 5.0e-140 501.5 333 73.9
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 5.0e-140 501.5 333 73.9
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.0e-140 501.5 330 74.5
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.5e-140 501.1 331 74.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 8.5e-140 500.7 324 74.1
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.4e-139 500.0 325 75.1
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.9e-139 499.6 330 73.6
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.5e-139 499.2 324 75.3
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.5e-139 499.2 335 73.1
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 7.2e-139 497.7 268 85.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 9.3e-139 497.3 333 75.1
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 9.3e-139 497.3 324 74.4
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.1e-138 496.1 330 74.2
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.7e-138 495.7 323 74.9
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 3.6e-138 495.4 329 74.5
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 3.6e-138 495.4 338 73.4
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 6.1e-138 494.6 264 86.4
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 6.1e-138 494.6 329 72.9
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.3e-137 493.4 336 74.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.8e-137 493.0 323 75.5
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.0e-137 492.3 299 78.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 3.0e-137 492.3 345 71.6
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.9e-137 491.9 327 74.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.1e-137 491.5 333 72.4
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.7e-137 491.1 333 72.7
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 6.7e-137 491.1 333 72.7
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 6.7e-137 491.1 324 73.5
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 6.7e-137 491.1 330 74.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.9e-136 489.6 350 70.9
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.3e-136 488.4 300 78.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 7.4e-136 487.6 341 71.8
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 9.7e-136 487.3 322 74.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.3e-135 486.9 341 70.7
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.2e-135 486.1 264 85.2
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.8e-135 485.7 266 85.0
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.8e-135 485.0 310 76.5
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 6.3e-135 484.6 328 71.6
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 8.2e-135 484.2 321 74.5
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 8.2e-135 484.2 287 79.8
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.1e-134 483.8 333 73.9
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.4e-134 483.4 298 77.9
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.8e-134 483.0 335 72.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.4e-134 482.6 335 72.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.4e-134 482.6 307 75.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 3.1e-134 482.3 343 69.1
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 6.9e-134 481.1 268 83.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 9.1e-134 480.7 298 77.2
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.2e-133 480.3 330 73.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.2e-133 480.3 268 83.6
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.5e-133 479.9 268 83.2
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.0e-133 479.6 263 84.0
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.6e-133 479.2 293 78.2
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 5.9e-133 478.0 333 70.9
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 5.9e-133 478.0 337 71.8
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 7.7e-133 477.6 264 84.1
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.0e-132 477.2 293 78.2
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.7e-132 476.5 339 72.6
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.2e-132 476.1 324 72.8
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 2.9e-132 475.7 262 82.8
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.5e-131 472.6 321 74.8
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-131 472.6 264 83.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.6e-130 468.8 332 71.1
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 4.6e-130 468.4 321 71.3
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.8e-129 466.5 242 89.7
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 7.4e-128 461.1 265 81.1
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 9.7e-128 460.7 331 69.2
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.2e-127 459.5 331 68.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.4e-126 456.1 270 79.3
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.0e-125 453.0 242 86.4
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.1e-122 443.0 332 66.9
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 5.7e-120 434.9 233 87.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.2e-119 433.0 327 63.9
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.2e-117 427.2 261 77.4
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 8.5e-116 421.0 274 74.1
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 3.6e-114 415.6 247 81.8
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.4e-113 413.7 340 63.5
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 8.8e-113 411.0 214 87.9
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.2e-112 410.6 217 85.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.1e-110 404.1 221 83.7
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 4.1e-110 402.1 217 83.9
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 5.3e-110 401.7 221 83.7
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 6.5e-108 394.8 228 80.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.5e-107 392.9 333 61.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-106 390.2 332 60.8
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 8.0e-106 387.9 268 70.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 4.4e-104 382.1 208 84.6
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.3e-100 370.5 218 77.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.8e-98 362.8 290 64.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 8.3e-95 351.3 317 58.7
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 2.3e-92 343.2 340 54.7
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.4e-87 325.1 243 69.1
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.8e-80 302.0 211 73.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.8e-80 302.0 277 55.2
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-78 295.8 154 89.0
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-77 294.3 208 70.2
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.1e-75 287.7 152 86.8
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 5.2e-73 278.9 228 64.5
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 5.8e-72 275.4 218 64.7
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.3e-68 264.2 213 66.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 5.1e-68 262.3 166 75.3
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 8.4e-55 218.4 129 78.3
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.3e-50 204.5 147 67.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.8e-41 174.1 172 57.0
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 4.8e-26 122.9 117 59.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 5.1e-20 102.8 82 62.2
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 4.3e-19 99.8 128 47.7
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 7.4e-19 99.0 113 54.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.2e-14 83.2 49 71.4


User provided reference genes

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