Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.8e-30 134.0 62 100.0
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 5.2e-19 97.1 57 78.9
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.5e-18 95.5 57 77.2
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.5e-18 95.5 57 75.4
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 4.4e-18 94.0 61 75.4
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.4e-18 94.0 55 78.2
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.4e-18 94.0 55 78.2
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 4.4e-18 94.0 58 74.1
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 5.8e-18 93.6 55 78.2
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 5.8e-18 93.6 58 74.1
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.8e-18 93.6 60 73.3
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.8e-18 93.6 60 73.3
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.8e-18 93.6 58 69.0
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 5.8e-18 93.6 55 78.2
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 5.8e-18 93.6 55 78.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 7.5e-18 93.2 58 75.9
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 7.5e-18 93.2 60 71.7
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 9.8e-18 92.8 57 73.7
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.3e-17 92.4 58 74.1
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.3e-17 92.4 57 75.4
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.3e-17 92.4 60 70.0
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 2.2e-17 91.7 58 75.9
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 2.9e-17 91.3 55 76.4
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.7e-17 90.9 58 72.4
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.9e-17 90.5 58 70.7
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 4.9e-17 90.5 59 72.9
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 4.9e-17 90.5 58 70.7
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 4.9e-17 90.5 59 69.5
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 6.4e-17 90.1 59 74.6
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-16 89.4 57 70.2
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-16 89.4 57 70.2
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-16 89.4 57 70.2
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.1e-16 89.4 58 69.0
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 1.4e-16 89.0 56 71.4
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.4e-16 89.0 58 72.4
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.9e-16 88.6 56 67.9
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.9e-16 88.6 56 69.6
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 1.9e-16 88.6 59 67.8
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.4e-16 88.2 56 67.9
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.4e-16 88.2 58 69.0
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.4e-16 88.2 60 71.7
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.4e-16 88.2 57 71.9
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.4e-16 88.2 60 70.0
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 2.4e-16 88.2 58 70.7
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 3.2e-16 87.8 55 72.7
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.2e-16 87.8 59 67.8
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 3.2e-16 87.8 58 70.7
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 4.1e-16 87.4 57 70.2
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.1e-16 87.4 54 75.9
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.4e-16 87.0 58 69.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 5.4e-16 87.0 58 69.0
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.4e-16 87.0 57 73.7
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 7.0e-16 86.7 58 69.0
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 7.0e-16 86.7 58 65.5
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 1.2e-15 85.9 55 70.9
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-15 85.9 56 69.6
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.2e-15 85.9 58 69.0
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.6e-15 85.5 56 69.6
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.6e-15 85.5 58 67.2
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.6e-15 85.5 60 63.3
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 2.0e-15 85.1 55 70.9
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 2.0e-15 85.1 55 70.9
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 2.0e-15 85.1 56 73.2
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 2.0e-15 85.1 58 70.7
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.0e-15 85.1 58 67.2
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 2.0e-15 85.1 55 70.9
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.0e-15 85.1 54 72.2
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.7e-15 84.7 55 69.1
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 72.2
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 72.2
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 72.2
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 72.2
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 2.7e-15 84.7 59 64.4
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 72.2
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 72.2
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 2.7e-15 84.7 55 70.9
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.5e-15 84.3 58 67.2
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.5e-15 84.3 58 67.2
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 3.5e-15 84.3 60 61.7
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 3.5e-15 84.3 60 63.3
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 4.6e-15 84.0 55 72.7
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 4.6e-15 84.0 59 64.4
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 6.0e-15 83.6 55 69.1
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 6.0e-15 83.6 56 71.4
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.0e-14 82.8 58 65.5
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.0e-14 82.8 59 66.1
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.3e-14 82.4 58 63.8
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.7e-14 82.0 56 69.6
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 2.3e-14 81.6 55 67.3
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 3.9e-14 80.9 54 68.5
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 3.9e-14 80.9 56 67.9
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 5.0e-14 80.5 55 67.3
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 5.0e-14 80.5 55 67.3
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 6.6e-14 80.1 54 63.0
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 8.6e-14 79.7 52 63.5
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-13 79.3 58 62.1
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.5e-13 79.0 55 61.8
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.5e-13 79.0 56 67.9
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.9e-13 78.6 58 63.8
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.5e-13 78.2 55 61.8
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.5e-13 78.2 58 67.2
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.3e-13 77.8 55 56.4
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 9.5e-13 76.3 53 62.3
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 9.5e-13 76.3 56 64.3
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 9.5e-13 76.3 51 68.6
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 9.5e-13 76.3 56 58.9
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.2e-12 75.9 53 66.0
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.2e-12 75.9 58 60.3
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.6e-12 75.5 57 61.4
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.6e-12 75.5 59 57.6
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 2.1e-12 75.1 62 56.5
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 2.1e-12 75.1 56 69.6
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 6.2e-12 73.6 54 61.1
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.1e-12 73.2 53 66.0
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.1e-12 73.2 53 66.0
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 8.1e-12 73.2 53 66.0
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 3.1e-11 71.2 54 64.8
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 5.2e-11 70.5 54 59.3
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 7.5e-10 66.6 58 53.4
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 7.5e-10 66.6 59 52.5
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 9.8e-10 66.2 55 60.0
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 2.9e-09 64.7 58 53.4
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 2.4e-08 61.6 46 65.2
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 5.4e-08 60.5 39 66.7
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 7.1e-08 60.1 36 66.7
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 6.0e-07 57.0 79 39.2
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 6.0e-07 57.0 50 50.0
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.7e-06 55.5 50 48.0


User provided reference genes

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