Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 9.1e-57 223.4 117 100.0
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 4.2e-46 188.0 112 86.6
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 2.3e-44 182.2 112 83.0
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 2.3e-44 182.2 112 84.8
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 2.3e-44 182.2 112 84.8
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 8.8e-44 180.3 112 82.1
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 1.7e-42 176.0 113 79.6
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 2.8e-42 175.3 115 78.3
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 4.8e-42 174.5 113 77.0
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 4.8e-42 174.5 115 80.0
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 6.3e-42 174.1 115 80.0
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 8.3e-42 173.7 115 80.0
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 8.3e-42 173.7 115 80.0
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 4.1e-41 171.4 114 78.9
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 4.1e-41 171.4 115 80.0
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 9.1e-41 170.2 114 78.9
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 3.5e-40 168.3 115 75.7
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 7.7e-40 167.2 112 77.7
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 1.0e-39 166.8 119 77.3
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.3e-39 166.4 111 75.7
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 1.7e-39 166.0 115 75.7
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 2.9e-39 165.2 109 76.1
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 5.0e-39 164.5 114 75.4
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 5.0e-39 164.5 114 75.4
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 5.0e-39 164.5 114 75.4
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 6.6e-39 164.1 106 76.4
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 6.6e-39 164.1 114 75.4
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 6.6e-39 164.1 112 75.9
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 1.1e-38 163.3 112 75.0
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 3.3e-38 161.8 103 81.6
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 3.3e-38 161.8 121 74.4
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.3e-38 161.8 119 75.6
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.3e-38 161.8 119 75.6
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 4.2e-38 161.4 112 74.1
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 5.5e-38 161.0 106 78.3
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 7.2e-38 160.6 113 73.5
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 9.5e-38 160.2 113 71.7
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 1.2e-37 159.8 95 86.3
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 1.6e-37 159.5 112 75.0
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 2.1e-37 159.1 112 75.0
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 2.1e-37 159.1 116 73.3
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 2.8e-37 158.7 106 75.5
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 3.6e-37 158.3 112 73.2
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 3.6e-37 158.3 113 74.3
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 4.7e-37 157.9 104 76.9
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 4.7e-37 157.9 104 76.9
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 4.7e-37 157.9 113 72.6
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 6.1e-37 157.5 114 76.3
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 8.0e-37 157.1 106 75.5
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 1.0e-36 156.8 108 75.9
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 1.0e-36 156.8 106 74.5
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.0e-36 155.2 115 75.7
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 4.0e-36 154.8 106 76.4
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 6.8e-36 154.1 107 75.7
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 8.9e-36 153.7 116 74.1
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.2e-35 153.3 97 77.3
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 1.2e-35 153.3 97 79.4
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 2.6e-35 152.1 103 78.6
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 2.6e-35 152.1 103 78.6
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 2.6e-35 152.1 109 69.7
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.4e-35 151.8 119 71.4
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 4.4e-35 151.4 106 70.8
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 5.7e-35 151.0 106 70.8
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 5.7e-35 151.0 106 74.5
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.3e-34 149.8 106 71.7
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 1.3e-34 149.8 107 73.8
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.3e-34 149.8 108 73.1
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 2.2e-34 149.1 106 70.8
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 2.2e-34 149.1 102 79.4
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 3.7e-34 148.3 113 71.7
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 3.7e-34 148.3 99 75.8
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 4.9e-34 147.9 107 72.9
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 6.3e-34 147.5 114 68.4
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 8.3e-34 147.1 119 68.1
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 8.3e-34 147.1 108 73.1
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 8.3e-34 147.1 110 67.3
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 1.4e-33 146.4 112 71.4
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.8e-33 146.0 105 68.6
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 1.8e-33 146.0 110 71.8
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 5.4e-33 144.4 105 68.6
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 7.0e-33 144.1 102 74.5
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 7.0e-33 144.1 89 80.9
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 9.2e-33 143.7 110 70.0
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 1.2e-32 143.3 89 77.5
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 1.2e-32 143.3 110 70.9
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 1.6e-32 142.9 98 77.6
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 2.0e-32 142.5 105 67.6
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 2.0e-32 142.5 112 67.9
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 2.0e-32 142.5 110 70.9
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 3.5e-32 141.7 107 68.2
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 2.3e-31 139.0 108 69.4
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 2.9e-31 138.7 88 76.1
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 3.8e-31 138.3 92 75.0
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 2.5e-30 135.6 82 80.5
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 8.0e-29 130.6 81 76.5
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.0e-28 128.6 82 76.8
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 1.7e-26 122.9 113 62.8
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 2.7e-24 115.5 103 61.2
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 4.6e-24 114.8 85 70.6
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 4.6e-24 114.8 85 70.6
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 1.9e-22 109.4 85 63.5
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 1.4e-20 103.2 82 67.1
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 1.4e-20 103.2 82 67.1
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 2.3e-20 102.4 83 68.7
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 4.0e-20 101.7 84 57.1
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 5.2e-20 101.3 81 66.7
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 5.2e-20 101.3 125 48.0
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 1.5e-19 99.8 102 46.1
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 9.2e-17 90.5 115 47.0
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 4.6e-16 88.2 76 68.4
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 7.8e-16 87.4 58 74.1
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.0e-15 87.0 81 59.3
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 3.9e-15 85.1 58 72.4
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.9e-14 82.8 58 69.0
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 2.5e-14 82.4 78 64.1
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 4.3e-14 81.6 81 55.6
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 1.6e-13 79.7 89 42.7
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 1.6e-13 79.7 68 58.8
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 4.7e-13 78.2 51 68.6
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 2.0e-11 72.8 64 54.7
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 7.5e-11 70.9 85 47.1
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 3.7e-10 68.6 49 71.4
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 8.3e-10 67.4 54 57.4
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 3.9e-07 58.5 46 58.7
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 1.5e-06 56.6 41 63.4
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 1.9e-06 56.2 41 63.4
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 1.9e-06 56.2 41 63.4
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 7.3e-06 54.3 28 92.9


User provided reference genes

Program Settings