Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 6.1e-177 624.0 310 100.0
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 9.3e-125 450.7 314 76.8
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.6e-124 449.9 310 75.2
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 3.9e-123 445.3 311 74.9
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 9.9e-119 430.6 314 68.2
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.7e-118 429.9 309 72.8
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 2.2e-118 429.5 310 73.2
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.4e-117 426.8 309 71.8
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 2.4e-117 426.0 309 71.2
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 5.1e-115 418.3 310 69.0
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 2.8e-113 412.5 297 71.7
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 3.1e-112 409.1 313 65.5
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 4.0e-112 408.7 310 67.1
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 2.6e-111 406.0 307 69.1
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 5.8e-111 404.8 305 69.5
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 7.6e-111 404.4 335 63.6
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 2.2e-110 402.9 310 67.4
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 2.9e-110 402.5 301 71.1
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 4.9e-110 401.7 279 72.0
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.1e-109 400.6 225 86.7
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.4e-109 400.2 239 79.5
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.5e-109 399.4 313 65.8
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 7.1e-109 397.9 303 67.7
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.0e-107 394.0 304 66.1
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.5e-106 390.2 303 67.7
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-106 389.8 297 68.7
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 3.3e-106 389.0 299 68.2
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 7.4e-106 387.9 312 64.1
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.2e-105 386.3 327 61.5
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.8e-105 385.2 299 67.9
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 6.3e-105 384.8 337 59.9
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 8.2e-105 384.4 307 65.5
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 1.1e-104 384.0 298 64.8
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-104 384.0 299 67.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.8e-104 383.3 220 82.3
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 7.6e-103 377.9 269 68.8
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.7e-102 376.7 287 66.9
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-102 376.7 299 66.9
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-102 376.7 314 62.4
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.2e-102 376.3 318 62.6
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 3.8e-102 375.6 280 69.3
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 5.5e-101 371.7 259 69.5
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 5.5e-101 371.7 308 64.0
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 7.2e-101 371.3 332 61.7
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.2e-100 370.5 347 56.8
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.6e-100 370.2 305 63.3
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.7e-100 369.4 306 62.7
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.3e-99 366.3 246 72.8
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 3.0e-99 365.9 301 63.8
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.5e-98 363.6 318 58.2
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 1.9e-98 363.2 221 78.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.5e-98 362.8 255 69.4
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 3.3e-98 362.5 339 56.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.3e-97 360.5 243 71.6
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.7e-97 360.1 248 72.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.2e-97 359.8 258 70.9
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 2.2e-97 359.8 249 69.1
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 2.2e-97 359.8 252 71.8
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.2e-97 359.8 222 77.9
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 3.7e-97 359.0 249 69.1
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 6.3e-97 358.2 216 77.8
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.2e-97 357.8 248 71.4
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.1e-96 357.5 324 58.0
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.8e-96 356.7 233 73.0
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 3.1e-96 355.9 224 74.6
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 4.1e-96 355.5 311 58.8
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 6.9e-96 354.8 222 75.7
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 9.1e-96 354.4 317 60.6
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.2e-95 354.0 231 73.6
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.2e-95 354.0 246 72.0
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 2.0e-95 353.2 255 70.2
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 2.0e-95 353.2 249 68.7
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 4.5e-95 352.1 221 75.1
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 5.9e-95 351.7 237 72.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.9e-95 351.7 367 54.8
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 5.9e-95 351.7 222 76.1
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.3e-94 350.5 270 66.3
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-94 350.1 207 78.3
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.2e-94 349.7 222 75.7
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 6.5e-94 348.2 232 72.4
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.1e-93 347.4 336 55.1
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-93 347.1 220 72.7
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 2.5e-93 346.3 262 67.6
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 4.2e-93 345.5 255 66.7
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 5.5e-93 345.1 246 69.9
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 9.4e-93 344.4 241 68.9
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 6.1e-92 341.7 251 66.1
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 6.1e-92 341.7 237 69.2
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.0e-91 340.9 259 66.8
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.8e-91 340.1 224 74.1
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 3.0e-91 339.3 234 70.5
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.0e-91 339.3 252 65.5
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 3.9e-91 339.0 231 71.4
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 6.7e-91 338.2 353 53.8
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.5e-90 337.0 326 56.1
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.3e-89 334.0 316 57.6
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.2e-89 333.2 232 69.4
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 2.8e-89 332.8 198 76.3
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.7e-89 332.4 216 70.8
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 3.7e-89 332.4 292 58.6
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 8.2e-89 331.3 218 72.0
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 8.2e-89 331.3 218 72.0
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 1.1e-88 330.9 303 57.1
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.4e-88 329.7 215 72.6
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 4.1e-88 328.9 343 50.1
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.3e-86 323.9 221 70.6
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.2e-84 317.4 306 58.5
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.7e-81 305.8 300 58.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 9.1e-80 301.2 195 76.4
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 3.8e-78 295.8 331 53.8
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.2e-76 290.8 266 58.6
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.6e-76 289.3 230 67.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.3e-75 286.6 180 75.6
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.0e-75 286.2 404 43.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.3e-74 282.7 248 60.1
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 1.7e-73 280.4 201 68.7
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 2.2e-70 270.0 276 50.4
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.2e-69 265.0 219 62.1
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.6e-66 256.5 332 47.3
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.5e-63 246.1 238 55.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.2e-60 237.7 131 77.9
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.3e-59 233.4 221 54.8
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.5e-58 230.7 162 66.0
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-56 224.2 204 56.4
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.4e-56 224.2 124 80.6
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 3.1e-56 223.0 163 68.1
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 3.1e-56 223.0 133 77.4
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.8e-52 209.9 135 73.3
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 5.2e-51 205.7 165 66.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.7e-46 190.7 216 53.2
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.4e-43 181.0 278 39.6
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 7.5e-42 175.3 124 59.7
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 9.5e-37 158.3 196 43.4
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 3.2e-32 143.3 89 74.2
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.2e-32 143.3 89 74.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.4e-27 127.1 125 56.8
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 3.5e-23 113.2 148 54.1
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.3e-13 79.7 138 44.2
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-08 64.7 32 81.2
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 4.2e-08 63.2 171 36.3
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-07 61.2 63 58.7


User provided reference genes

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