Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 0.0e+00 1506.5 769 100.0
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 3.6e-218 762.3 780 58.5
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 3.5e-213 745.7 776 58.1
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 5.2e-209 731.9 776 57.2
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 7.6e-160 568.5 787 47.0
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 9.9e-152 541.6 775 45.8
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 9.3e-150 535.0 709 48.2
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 2.7e-149 533.5 757 46.0
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 1.0e-148 531.6 778 44.5
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.8e-148 530.8 756 46.3
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 3.0e-148 530.0 765 44.8
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 3.9e-148 529.6 778 44.7
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 3.3e-147 526.6 778 44.2
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 4.3e-147 526.2 558 54.3
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 7.4e-147 525.4 761 46.5
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.4e-145 521.2 751 46.2
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.2e-144 518.1 810 43.5
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.3e-143 514.6 759 46.1
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 3.8e-135 486.5 756 41.3
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.9e-134 484.2 763 43.0
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 9.3e-134 481.9 703 44.2
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.0e-132 478.4 725 43.4
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 6.3e-130 469.2 759 42.8
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.8e-129 467.6 838 40.2
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.2e-127 460.7 518 49.8
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.0e-124 451.8 788 39.8
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.0e-124 450.3 791 40.2
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 6.7e-124 449.1 767 40.8
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 9.7e-123 445.3 728 42.3
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 1.3e-122 444.9 665 44.2
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 2.8e-122 443.7 768 40.9
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 9.1e-121 438.7 723 41.5
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.0e-116 425.2 770 40.6
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.8e-116 424.5 676 41.4
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 6.7e-116 422.5 699 42.2
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 2.2e-114 417.5 618 43.4
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 6.3e-114 416.0 792 40.3
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 6.3e-114 416.0 737 39.9
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.0e-111 408.7 717 41.7
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 8.5e-111 405.6 668 41.6
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 1.9e-110 404.4 776 39.4
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 2.7e-109 400.6 761 40.3
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.9e-108 396.7 743 40.2
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 5.7e-107 392.9 665 39.5
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.3e-106 389.4 555 47.0
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 8.2e-106 389.0 774 38.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 1.8e-105 387.9 721 38.3
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 9.1e-105 385.6 651 39.5
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.2e-104 385.2 720 39.7
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 4.5e-104 383.3 723 39.1
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 2.9e-103 380.6 717 40.2
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 5.0e-103 379.8 530 46.4
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 8.5e-103 379.0 771 37.2
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 7.2e-102 375.9 558 43.4
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 1.4e-100 371.7 558 42.8
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.2e-100 369.8 743 37.1
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 5.2e-100 369.8 715 39.0
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 1.2e-99 368.6 715 39.3
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 6.3e-98 362.8 751 37.7
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.4e-97 361.7 711 37.7
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.4e-97 360.9 731 36.7
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 3.1e-97 360.5 562 42.2
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 4.1e-97 360.1 736 37.0
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 2.7e-96 357.5 709 37.2
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 3.5e-96 357.1 731 36.9
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 4.5e-96 356.7 725 36.6
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 3.8e-95 353.6 580 40.2
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 4.2e-94 350.1 792 34.0
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.2e-93 348.6 521 44.3
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.6e-93 348.2 525 44.2
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 3.0e-92 344.0 767 36.1
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 6.8e-92 342.8 892 32.5
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 2.6e-91 340.9 724 35.2
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 3.4e-91 340.5 731 36.5
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 3.7e-90 337.0 379 50.1
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 8.3e-90 335.9 698 37.0
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 7.0e-89 332.8 658 38.4
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 5.0e-87 326.6 682 37.4
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 3.6e-85 320.5 694 36.6
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 2.0e-83 314.7 715 35.2
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.4e-83 313.5 739 33.7
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.4e-83 313.5 733 33.8
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.2e-82 311.2 543 41.1
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 4.1e-81 307.0 413 45.5
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 1.3e-79 302.0 375 46.4
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 2.3e-79 301.2 722 33.7
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 3.0e-76 290.8 448 41.1
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 3.4e-75 287.3 473 40.8
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.2e-69 266.5 395 46.8
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 4.6e-64 250.4 351 47.9
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 5.6e-62 243.4 339 49.3
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 9.2e-57 226.1 271 55.0
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.2e-56 225.7 389 38.6
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 6.2e-53 213.4 612 28.9
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.4e-52 212.2 535 35.0
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 9.9e-51 206.1 461 36.2
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 7.1e-49 199.9 563 30.7
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 7.8e-48 196.4 290 42.1
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.7e-47 195.3 677 28.4
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.5e-46 192.2 454 34.1
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 4.7e-45 187.2 362 34.0
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 6.9e-44 183.3 306 38.2
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.4e-41 174.9 237 42.2
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 3.9e-39 167.5 181 58.0
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 3.3e-38 164.5 365 37.3
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 3.6e-37 161.0 755 25.8
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 3.4e-35 154.5 373 35.7
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 3.8e-34 151.0 340 38.8
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 5.1e-31 140.6 148 48.6
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 2.4e-28 131.7 284 34.2
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.2e-25 121.3 122 59.0
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 2.1e-21 108.6 285 38.6
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 6.2e-21 107.1 305 31.1
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 8.2e-21 106.7 79 69.6
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 3.2e-17 94.7 162 37.0
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 5.5e-17 94.0 322 34.5
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.2e-13 82.0 287 30.7
Dinv03778 Davidia involucrata HOM05D006063 ORTHO05D045100 1.3e-10 72.8 260 31.9
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.5e-10 70.5 272 30.9
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 1.1e-09 69.7 121 43.8
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 2.5e-09 68.6 48 75.0
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 3.2e-09 68.2 129 45.0
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 7.2e-09 67.0 63 54.0
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 6.1e-08 63.9 40 82.5


User provided reference genes

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