Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.6e-118 428.3 229 100.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.5e-100 369.8 229 85.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-98 363.6 227 83.3
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 7.1e-98 360.9 218 86.2
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 7.1e-98 360.9 218 85.8
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.6e-97 359.8 227 83.7
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 4.6e-97 358.2 227 82.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 5.1e-96 354.8 227 82.4
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 3.1e-93 345.5 226 81.0
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.1e-93 345.5 225 81.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 4.1e-93 345.1 225 81.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 5.3e-93 344.7 225 80.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 3.8e-91 338.6 227 77.5
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.0e-91 338.2 230 78.3
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 7.9e-89 330.9 223 75.8
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.5e-87 326.6 223 74.4
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 3.3e-87 325.5 227 76.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.7e-87 324.7 227 74.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.7e-87 324.7 229 72.1
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.8e-86 322.4 234 74.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 4.8e-86 321.6 219 74.4
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.3e-86 321.2 227 74.4
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.1e-85 320.5 230 73.0
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-85 320.5 226 75.2
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.4e-85 320.1 228 72.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-85 320.1 229 72.9
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.4e-85 320.1 230 72.6
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.6e-84 315.8 223 74.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 3.4e-84 315.5 226 72.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.7e-84 314.3 226 72.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.7e-84 314.3 229 72.1
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.3e-83 313.5 228 71.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.9e-83 312.4 225 73.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.0e-83 311.6 227 70.5
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.5e-83 311.2 225 73.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 6.5e-83 311.2 222 71.6
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.9e-82 309.7 227 70.9
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 5.5e-82 308.1 227 69.2
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.2e-81 307.0 227 70.9
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.6e-81 306.6 225 69.3
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.1e-81 306.2 223 72.2
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.6e-81 305.4 225 68.9
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 6.1e-81 304.7 221 71.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 6.1e-81 304.7 227 71.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.9e-81 304.3 219 73.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.0e-80 303.9 226 68.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.3e-80 302.8 227 67.4
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.3e-80 302.8 225 71.1
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.9e-80 302.0 227 70.9
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.1e-80 301.6 227 67.0
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.1e-79 300.4 227 70.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.0e-79 299.7 212 72.6
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.6e-79 299.3 222 68.5
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.4e-79 298.5 224 68.3
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 7.4e-79 297.7 230 67.4
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-78 297.0 223 71.3
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.3e-78 297.0 224 67.9
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.3e-78 297.0 216 72.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.2e-78 296.2 232 66.4
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.7e-78 295.4 226 67.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 3.7e-78 295.4 225 67.1
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.7e-78 295.4 239 64.9
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-78 295.0 225 67.1
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.8e-78 295.0 230 67.0
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.8e-78 295.0 224 70.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.3e-78 294.7 239 65.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 6.3e-78 294.7 225 69.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 8.2e-78 294.3 224 70.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.1e-77 293.9 226 65.9
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-77 293.5 226 67.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.8e-77 293.1 223 68.2
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.4e-77 292.7 225 65.8
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.4e-77 292.7 225 65.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 3.1e-77 292.4 236 65.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.1e-77 292.0 223 70.4
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 4.1e-77 292.0 223 70.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.1e-77 292.0 240 65.8
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 9.1e-77 290.8 220 71.4
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-76 290.4 231 65.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.5e-76 290.0 235 63.8
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.0e-76 289.7 247 66.0
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.9e-76 288.1 223 69.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 5.9e-76 288.1 226 65.9
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.7e-75 286.6 223 69.1
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.9e-75 285.8 223 67.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.8e-75 285.4 227 64.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 3.8e-75 285.4 241 63.1
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 5.0e-75 285.0 229 65.9
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.5e-74 282.7 229 64.6
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.2e-74 281.2 229 64.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 7.2e-74 281.2 237 64.6
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 8.0e-73 277.7 222 66.2
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.4e-72 276.9 226 67.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.8e-72 276.6 223 67.7
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 6.7e-72 274.6 223 66.4
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.1e-71 273.9 221 69.7
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.3e-71 272.3 229 63.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.7e-70 270.0 223 64.6
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.2e-70 269.6 224 65.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.4e-69 266.9 224 62.5
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.8e-69 266.5 232 59.9
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.4e-69 266.2 226 61.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 4.1e-69 265.4 215 66.5
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 9.1e-69 264.2 223 63.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 5.9e-68 261.5 229 61.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 6.5e-67 258.1 231 58.9
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.1e-66 257.3 279 53.4
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 3.2e-66 255.8 258 56.2
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 5.5e-66 255.0 230 59.1
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.3e-64 249.6 229 56.3
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 8.8e-64 247.7 187 66.8
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 5.7e-63 245.0 174 71.8
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.3e-62 241.5 223 61.0
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 3.1e-61 239.2 176 72.7
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 4.1e-61 238.8 163 76.1
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 2.2e-59 233.0 225 58.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.8e-59 232.3 169 71.6
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.7e-57 226.1 246 50.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.3e-56 223.0 163 69.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 6.8e-56 221.5 229 55.0
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.2e-55 220.7 241 50.6
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.4e-53 213.0 158 69.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.7e-52 209.5 162 71.6
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.9e-52 208.4 157 70.7
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-50 204.1 141 77.3
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.9e-50 203.4 226 54.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 7.0e-45 184.9 145 66.9
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.0e-44 183.3 150 66.7
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.7e-43 180.3 222 48.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.6e-41 172.6 187 51.9
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.0e-41 171.4 193 50.3
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.0e-40 171.0 226 45.1
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 3.1e-40 169.5 221 44.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.2e-39 167.5 145 61.4
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.6e-35 151.8 126 68.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.6e-35 151.8 191 47.6
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 3.3e-34 149.4 115 69.6
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.6e-34 148.7 143 60.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.1e-33 146.7 184 47.8
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.1e-33 146.7 115 69.6
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 2.8e-33 146.4 115 70.4
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.8e-32 143.7 221 38.5
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.3e-32 143.3 145 56.6
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 4.4e-31 139.0 235 40.0
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 9.2e-29 131.3 228 37.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.7e-28 129.8 90 76.7
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.7e-27 127.1 181 43.6
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 5.1e-27 125.6 200 49.0
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.9e-26 123.6 84 72.6
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.9e-26 123.6 84 72.6
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 7.3e-26 121.7 229 36.7
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.4e-24 117.5 157 48.4
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.7e-22 110.5 150 48.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.4e-21 107.5 92 60.9
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-19 100.5 221 34.4
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-19 100.5 221 34.4
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.7e-19 100.5 79 64.6
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.7e-19 100.5 228 36.4
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.0e-19 99.8 171 39.8
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.5e-18 97.4 106 48.1
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.6e-17 94.0 70 70.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.7e-17 92.4 103 53.4
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 6.2e-17 92.0 75 66.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 3.1e-16 89.7 53 81.1
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.0e-16 89.4 79 54.4
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 4.0e-16 89.4 150 40.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 4.0e-16 89.4 53 81.1
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 4.0e-16 89.4 53 81.1
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 4.0e-16 89.4 52 80.8
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.2e-15 87.8 107 49.5
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-15 85.9 210 32.9
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-14 84.3 80 60.0
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 4.9e-14 82.4 72 58.3
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 6.4e-14 82.0 54 72.2
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-13 80.9 55 67.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.0e-12 75.5 81 53.1
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.3e-11 73.6 78 56.4
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.6e-10 68.2 88 45.5
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 6.2e-09 65.5 108 42.6
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 3.1e-08 63.2 63 54.0
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 4.0e-08 62.8 53 58.5
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 9.9e-07 58.2 44 68.2
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 2.9e-06 56.6 39 66.7
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 6.4e-06 55.5 38 76.3


User provided reference genes

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