Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 4.1e-54 214.5 113 100.0
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 2.8e-47 191.8 112 86.6
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.4e-46 188.7 112 85.7
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.1e-46 188.0 112 83.9
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 4.1e-46 188.0 112 83.9
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 4.5e-45 184.5 112 83.9
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.9e-45 184.1 112 83.0
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.0e-44 183.3 112 83.0
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.3e-44 183.0 109 85.3
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.3e-44 183.0 112 82.1
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.3e-44 183.0 112 82.1
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.3e-44 183.0 112 83.0
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.7e-44 182.6 112 84.8
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.9e-44 181.8 112 82.1
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 2.9e-44 181.8 112 83.0
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 82.1
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 82.1
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 6.5e-44 180.6 112 81.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 8.5e-44 180.3 112 82.1
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-43 179.5 112 81.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.5e-43 179.5 112 80.4
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.5e-43 179.5 112 79.5
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.9e-43 179.1 112 79.5
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.2e-43 177.9 112 80.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 5.5e-43 177.6 108 81.5
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 9.4e-43 176.8 112 79.5
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 9.4e-43 176.8 112 80.4
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 81.2
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 77.7
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.1e-42 175.6 112 78.6
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 2.1e-42 175.6 112 77.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.1e-42 175.6 112 77.7
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.7e-42 175.3 112 78.6
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.7e-42 175.3 112 78.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 78.6
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 77.7
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 4.7e-42 174.5 113 79.6
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 4.7e-42 174.5 112 77.7
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 4.7e-42 174.5 140 68.6
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 6.1e-42 174.1 110 79.1
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 6.1e-42 174.1 112 76.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.1e-42 174.1 112 76.8
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 8.0e-42 173.7 112 76.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 8.0e-42 173.7 111 79.3
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.0e-41 173.3 112 79.5
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.4e-41 172.9 108 78.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 78.8
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 78.8
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 78.8
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 78.8
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 80.4
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.0e-41 171.8 112 78.6
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 3.0e-41 171.8 112 75.9
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 3.0e-41 171.8 110 79.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 76.8
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 76.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 4.0e-41 171.4 111 79.3
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 79.5
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 6.8e-41 170.6 104 85.6
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 78.8
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 8.8e-41 170.2 112 74.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 8.8e-41 170.2 113 77.9
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 8.8e-41 170.2 110 78.2
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.2e-40 169.9 109 78.0
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.2e-40 169.9 113 77.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 74.1
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 75.9
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.5e-40 169.5 113 77.0
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.0e-40 169.1 109 78.9
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 74.1
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 75.9
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 75.0
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 76.8
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 75.0
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 74.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.7e-40 167.5 110 76.4
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.7e-40 167.5 110 76.4
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 5.7e-40 167.5 112 72.3
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 5.7e-40 167.5 112 75.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 5.7e-40 167.5 113 76.1
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 108 77.8
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.7e-39 166.0 112 75.9
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.8e-39 165.2 112 72.3
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.7e-39 164.9 112 77.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 4.8e-39 164.5 104 78.8
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 71.4
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.8e-38 162.5 108 75.9
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 3.1e-38 161.8 112 75.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.1e-38 161.4 112 74.1
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.1e-38 161.4 112 74.1
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 70.5
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 71.4
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 7.0e-38 160.6 108 76.9
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 9.1e-38 160.2 112 72.3
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.2e-37 159.8 108 75.9
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.2e-37 159.8 108 75.9
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.2e-37 159.8 108 75.9
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 108 75.9
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 2.0e-37 159.1 108 75.9
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.7e-37 158.7 108 75.0
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 2.7e-37 158.7 104 77.9
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 4.5e-37 157.9 113 71.7
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.0e-36 156.8 144 61.8
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.0e-36 156.8 143 59.4
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 72.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 73.2
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.9e-36 155.2 112 71.4
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 5.0e-36 154.5 113 70.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.2e-35 151.4 108 71.3
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.2e-34 149.8 112 69.6
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 4.0e-33 144.8 84 88.1
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.6e-32 142.1 81 88.9
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.6e-32 142.1 90 78.9
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.2e-31 139.0 79 88.6
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 8.3e-31 137.1 78 88.5
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.1e-30 136.7 81 85.2
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.1e-30 136.7 111 64.0
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-30 136.0 94 74.5
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.1e-30 135.2 109 65.1
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 5.4e-30 134.4 111 62.2
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.2e-29 133.3 77 88.3
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.8e-28 128.3 92 71.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.5e-27 126.3 83 77.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.5e-27 126.3 83 77.1
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.8e-25 119.4 77 77.9
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.8e-25 119.4 72 83.3
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.5e-24 116.3 110 57.3
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.7e-24 114.4 65 87.7
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 5.7e-24 114.4 78 73.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 4.1e-22 108.2 106 50.9
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 2.7e-21 105.5 67 76.1
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.0e-20 103.6 71 71.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.7e-20 102.8 96 59.4
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.0e-20 101.3 71 70.4
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 5.0e-20 101.3 112 50.9
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.5e-19 99.8 109 50.5
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.6e-19 97.8 111 46.8
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.7e-18 94.7 100 55.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 4.0e-17 91.7 62 71.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-16 89.7 59 69.5
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 9.8e-16 87.0 106 48.1
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.4e-15 84.3 80 51.2
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.2e-14 80.5 55 74.5
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 2.7e-13 79.0 51 80.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.7e-13 79.0 95 50.5
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 4.6e-13 78.2 101 48.5
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.8e-13 77.4 104 42.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.3e-12 76.6 45 84.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-12 75.1 44 81.8
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 5.0e-12 74.7 51 76.5
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 5.0e-12 74.7 50 76.0
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 6.6e-12 74.3 53 71.7
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-11 73.6 44 81.8
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 4.3e-11 71.6 54 64.8
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 4.3e-11 71.6 44 77.3
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.2e-10 70.1 91 45.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.8e-10 68.9 44 70.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.2e-10 67.8 90 48.9
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.4e-09 66.6 93 47.3
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 5.2e-09 64.7 95 38.9
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-08 63.2 93 46.2
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-07 60.1 59 47.5


User provided reference genes

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