Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 9.0e-201 703.4 350 100.0
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 4.1e-161 571.6 405 73.1
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 8.3e-138 494.2 409 64.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 2.4e-137 492.7 403 63.8
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.4e-137 492.7 398 65.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 5.9e-136 488.0 410 63.7
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.1e-134 483.8 413 62.5
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.6e-133 479.9 364 67.3
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.1e-133 479.6 346 68.8
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.1e-133 479.6 408 62.3
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.1e-133 478.0 408 62.0
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 4.0e-132 475.3 400 62.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 6.8e-132 474.6 375 64.8
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.0e-131 473.0 407 61.4
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.4e-131 471.9 409 60.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 9.8e-131 470.7 405 60.0
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.7e-130 468.8 359 66.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.4e-129 464.9 407 60.4
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 5.4e-129 464.9 413 60.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.7e-128 462.6 409 59.7
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.3e-127 460.3 410 57.8
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.6e-127 458.0 350 65.4
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 8.6e-127 457.6 346 66.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 7.3e-126 454.5 371 61.5
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 7.3e-126 454.5 374 61.5
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.2e-125 453.8 411 57.4
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.2e-125 453.8 412 56.1
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.0e-124 450.7 408 58.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.3e-124 449.5 351 63.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 3.0e-124 449.1 370 62.7
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 3.0e-124 449.1 410 56.8
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.0e-124 449.1 371 61.5
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.0e-124 448.7 360 63.3
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 4.0e-124 448.7 345 63.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 4.0e-124 448.7 345 63.8
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 6.8e-124 448.0 345 64.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.2e-123 447.2 371 61.7
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.5e-123 446.8 355 64.5
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 3.4e-123 445.7 346 63.9
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 5.8e-123 444.9 344 62.5
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 5.8e-123 444.9 338 64.8
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 7.5e-123 444.5 333 67.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 9.8e-123 444.1 336 66.7
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.9e-122 442.6 403 56.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 6.4e-122 441.4 397 57.9
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 6.4e-122 441.4 403 57.6
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 6.4e-122 441.4 397 57.9
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.1e-121 440.7 339 65.5
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.1e-121 440.7 398 59.3
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.9e-121 439.9 379 59.9
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 2.4e-121 439.5 355 62.0
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 3.2e-121 439.1 374 60.4
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 7.0e-121 438.0 401 57.9
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.6e-120 436.8 329 66.0
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 2.0e-120 436.4 351 63.2
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.7e-119 433.3 374 59.4
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.3e-119 433.0 410 54.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.9e-119 432.2 350 60.6
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 8.6e-119 431.0 406 56.4
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 8.6e-119 431.0 406 56.4
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.5e-118 430.3 382 58.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.9e-118 429.9 380 59.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.3e-118 428.7 398 55.8
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 5.6e-118 428.3 406 55.9
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 5.6e-118 428.3 406 55.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 7.3e-118 427.9 388 57.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.5e-118 427.6 350 60.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.6e-117 426.8 340 62.6
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.8e-117 426.0 406 55.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 8.0e-117 424.5 381 58.0
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.4e-116 423.7 414 56.0
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.4e-116 423.7 405 55.6
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.3e-116 422.9 394 56.6
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.1e-116 422.5 363 60.1
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.2e-116 421.8 401 54.4
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.6e-115 419.5 340 63.2
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 9.8e-115 417.5 407 54.8
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.3e-114 417.2 327 65.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-114 416.8 375 59.7
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 3.7e-114 415.6 355 58.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 4.9e-114 415.2 318 66.4
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 4.9e-114 415.2 375 59.5
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.9e-113 413.3 346 58.7
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 5.4e-113 411.8 306 67.3
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.3e-111 407.1 367 56.9
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.3e-111 406.4 380 55.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 3.9e-111 405.6 344 58.4
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 5.0e-111 405.2 345 57.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.6e-111 404.8 368 59.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 4.3e-110 402.1 345 59.4
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 7.3e-110 401.4 351 59.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.6e-109 400.2 389 54.2
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 2.1e-109 399.8 317 62.1
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.6e-107 392.9 429 49.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.8e-107 391.7 340 57.1
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-103 380.9 380 54.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 8.6e-103 377.9 334 60.8
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 4.0e-100 369.0 345 52.8
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 4.0e-100 369.0 351 57.3
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.4e-99 365.9 340 59.1
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.4e-99 365.5 359 54.9
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.6e-96 357.1 338 53.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.9e-94 350.1 363 53.7
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.9e-94 350.1 562 40.2
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 7.3e-94 348.2 269 63.9
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 7.3e-94 348.2 307 56.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 2.1e-93 346.7 355 55.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.1e-93 346.7 280 63.6
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.4e-92 344.0 327 52.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.6e-83 313.2 208 70.2
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 9.3e-81 304.7 217 69.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 5.1e-79 298.9 330 51.5
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-78 297.7 345 44.3
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.6e-75 286.6 193 65.8
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.3e-74 284.3 320 44.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.3e-74 284.3 365 43.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.9e-73 280.4 316 45.9
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.9e-73 280.4 172 76.7
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.0e-71 273.1 322 44.4
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 5.1e-71 272.3 357 43.7
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 6.7e-71 271.9 295 54.2
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.1e-64 250.4 224 56.7
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.8e-58 229.6 279 44.4
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.0e-54 217.2 247 49.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 4.3e-54 216.1 247 50.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.9e-52 208.8 276 43.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.5e-51 206.1 210 54.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 5.9e-51 205.7 150 68.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 2.3e-47 193.7 117 71.8
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.9e-41 174.1 190 51.6
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.9e-39 166.4 150 52.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 5.2e-39 166.0 93 79.6
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.5e-33 147.1 153 53.6
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.2e-31 139.4 84 78.6
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.2e-29 134.0 303 30.4
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.3e-26 124.8 310 29.7
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 7.2e-25 119.0 97 55.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.6e-19 101.3 306 27.8
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 6.3e-13 79.3 68 55.9
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.3e-13 79.3 48 72.9
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 9.5e-09 65.5 151 25.8


User provided reference genes

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