Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.5e-161 573.2 322 100.0
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 3.0e-138 495.7 322 86.3
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.8e-128 461.8 325 77.5
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.0e-127 458.8 364 75.8
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 8.1e-120 434.5 325 78.5
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 2.6e-118 429.5 335 77.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.7e-117 426.8 328 77.4
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.1e-116 424.1 323 78.9
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.4e-116 423.7 325 77.5
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.0e-114 417.5 334 76.9
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.3e-114 416.4 337 76.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.9e-114 415.6 322 77.6
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.9e-114 415.6 335 72.2
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.7e-114 414.8 333 76.3
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.5e-113 412.9 329 76.3
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 3.3e-113 412.5 325 75.7
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 7.4e-113 411.4 347 72.0
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 9.6e-113 411.0 250 84.8
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.3e-112 410.6 326 76.7
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 4.8e-112 408.7 329 74.8
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 6.2e-112 408.3 329 76.6
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 4.5e-110 402.1 331 74.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.8e-110 401.7 326 75.2
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.3e-109 400.6 326 75.5
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 2.9e-109 399.4 330 76.4
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 3.8e-109 399.1 327 76.1
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 6.5e-109 398.3 325 75.7
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.4e-109 397.9 328 75.6
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.9e-108 396.7 324 74.1
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 3.2e-108 396.0 354 68.9
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 7.1e-108 394.8 330 74.8
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 9.3e-108 394.4 328 69.5
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 2.7e-107 392.9 325 73.8
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 2.3e-106 389.8 327 74.3
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 5.1e-106 388.7 330 70.9
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 6.7e-106 388.3 339 70.8
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 8.7e-106 387.9 330 70.9
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.5e-105 387.1 284 72.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 2.5e-105 386.3 327 70.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.5e-105 386.3 248 81.5
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 3.3e-105 386.0 328 72.0
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 4.3e-105 385.6 344 72.1
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 4.3e-105 385.6 344 72.1
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 4.3e-105 385.6 333 71.2
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 5.7e-105 385.2 328 71.0
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 5.7e-105 385.2 328 71.0
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 5.7e-105 385.2 328 70.1
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 7.4e-105 384.8 328 67.7
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 9.6e-105 384.4 328 70.7
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 9.6e-105 384.4 330 71.8
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.8e-104 382.9 330 70.0
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 3.7e-104 382.5 332 69.3
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 6.3e-104 381.7 327 69.4
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 6.3e-104 381.7 327 69.4
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.2e-104 381.3 328 69.5
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 9.0e-103 377.9 319 73.7
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 4.5e-102 375.6 329 66.6
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.5e-102 375.6 328 73.2
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.9e-101 372.9 347 69.7
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 6.5e-101 371.7 334 64.1
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.4e-100 370.5 322 73.0
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 2.5e-100 369.8 326 70.9
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.5e-100 368.6 242 78.9
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 7.2e-100 368.2 326 70.6
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.6e-99 365.9 253 75.1
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 4.6e-99 365.5 326 66.6
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 1.8e-98 363.6 326 65.6
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.8e-98 363.6 326 69.9
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 3.9e-98 362.5 328 65.2
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 9.7e-97 357.8 328 69.5
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.8e-96 356.3 328 71.3
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.4e-95 354.0 332 66.3
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.4e-95 353.2 325 63.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 4.1e-95 352.4 325 65.2
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 6.9e-95 351.7 326 67.8
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 4.5e-94 349.0 256 75.4
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.0e-93 347.8 329 68.7
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.3e-93 347.4 332 66.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.1e-92 344.4 324 63.9
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.1e-92 344.4 326 64.4
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.9e-92 343.6 343 63.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.2e-92 342.8 251 74.1
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.6e-91 339.3 328 66.2
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 6.1e-91 338.6 216 81.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.4e-90 337.4 328 62.2
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 1.8e-90 337.0 329 67.8
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 8.8e-90 334.7 329 67.2
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 4.4e-89 332.4 322 61.2
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 2.2e-88 330.1 327 67.6
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 9.1e-87 324.7 215 81.4
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 5.9e-86 322.0 251 70.9
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 4.2e-84 315.8 288 61.8
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.6e-83 313.9 214 79.9
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.7e-80 303.9 241 68.5
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.8e-80 303.1 330 56.1
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 6.3e-80 302.0 397 54.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.3e-80 302.0 351 57.8
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.8e-79 300.4 227 72.7
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.0e-78 297.0 242 68.6
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 7.7e-78 295.0 218 75.2
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.8e-77 292.7 249 65.1
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.7e-75 285.8 327 53.5
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 8.0e-75 285.0 238 65.1
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.4e-74 284.3 244 62.3
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.2e-73 281.2 339 55.5
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.2e-73 281.2 229 70.3
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.4e-73 279.3 333 58.6
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.8e-72 276.6 256 60.2
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.8e-72 276.6 335 56.4
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 8.2e-72 275.0 203 76.4
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 4.1e-71 272.7 189 78.8
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 5.3e-71 272.3 334 54.8
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 7.0e-71 271.9 329 59.3
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 4.5e-70 269.2 215 74.0
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.1e-68 264.6 339 54.9
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.1e-67 260.4 339 57.5
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.7e-67 260.0 337 55.5
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 8.8e-66 255.0 330 50.3
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 6.3e-64 248.8 254 58.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 6.3e-64 248.8 254 58.7
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 2.2e-61 240.4 257 57.6
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 2.2e-61 240.4 257 57.6
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 5.0e-61 239.2 257 57.6
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.5e-57 227.6 251 56.6
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 4.7e-51 206.1 262 46.6
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.1e-51 205.7 218 61.0
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.1e-44 184.9 152 71.7
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.8e-42 175.6 132 75.8
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.3e-40 168.7 102 85.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.9e-37 159.8 218 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 2.8e-27 127.1 140 47.9
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 6.8e-26 122.5 153 42.5
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.2e-25 121.7 216 43.5
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 2.6e-25 120.6 132 45.5
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 7.6e-25 119.0 108 62.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 2.1e-22 110.9 110 63.6
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 7.8e-22 109.0 117 68.4
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.8e-22 109.0 114 47.4
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.3e-21 108.2 155 39.4
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 9.6e-20 102.1 114 63.2
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.1e-18 98.6 113 45.1
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.5e-17 94.7 125 40.0
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 2.6e-17 94.0 124 60.5
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-14 85.1 114 64.0
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.0e-13 80.5 119 63.0
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.9e-12 77.8 145 53.8
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.8e-11 73.2 49 65.3
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.0e-09 67.8 100 54.0
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.9e-09 65.5 36 83.3
TAR636G2488 Trochodendron aralioides HOM05D004645 ORTHO05D005693 9.3e-07 58.9 27 96.3
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 2.7e-06 57.4 121 38.8


User provided reference genes

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