Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.9e-155 552.4 259 100.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 3.5e-141 505.0 259 91.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.2e-135 485.7 253 85.8
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.0e-133 479.2 253 84.6
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 7.7e-133 477.2 253 84.6
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 6.6e-132 474.2 254 83.9
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 8.0e-130 467.2 257 82.9
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.4e-129 466.5 256 82.0
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 8.9e-129 463.8 258 81.8
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.2e-128 463.4 258 81.4
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 2.0e-128 462.6 254 82.3
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.0e-128 462.6 257 81.7
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.4e-128 461.5 252 81.7
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 7.5e-128 460.7 254 82.3
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 2.8e-127 458.8 258 81.4
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.8e-127 458.8 252 81.0
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 6.3e-127 457.6 252 81.3
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.1e-126 456.8 254 81.5
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.8e-126 456.1 256 78.9
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-126 456.1 252 81.3
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 4.1e-126 454.9 255 80.4
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 4.1e-126 454.9 258 80.6
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 5.4e-126 454.5 254 81.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 9.2e-126 453.8 252 81.3
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.5e-125 451.4 251 82.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 4.5e-125 451.4 252 81.0
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 5.9e-125 451.1 251 82.1
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 5.9e-125 451.1 259 79.5
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 7.8e-125 450.7 252 82.5
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.0e-124 450.3 255 80.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.3e-124 449.9 260 79.6
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.3e-124 449.9 251 81.7
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.7e-124 449.5 257 77.8
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.7e-124 449.5 251 81.7
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 3.8e-124 448.4 254 80.7
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.1e-123 446.8 251 78.9
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.5e-123 445.7 256 78.9
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 2.5e-123 445.7 256 78.9
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 2.5e-123 445.7 256 78.9
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.5e-123 445.7 256 79.3
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.5e-123 445.7 256 79.3
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.3e-123 445.3 256 78.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.2e-122 443.4 245 81.2
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.6e-122 443.0 236 84.7
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 2.1e-122 442.6 254 79.1
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.1e-122 442.6 254 79.5
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.0e-121 440.3 261 77.4
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.0e-121 440.3 256 78.1
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-121 440.3 251 77.7
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-121 440.3 251 78.1
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.8e-121 439.5 262 77.1
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.8e-121 439.5 236 83.1
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 4.0e-121 438.3 263 77.6
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 4.0e-121 438.3 238 82.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 5.2e-121 438.0 238 81.9
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.2e-120 436.8 235 82.1
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.5e-120 436.4 234 83.3
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 2.0e-120 436.0 253 77.5
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 4.4e-120 434.9 238 81.5
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 5.8e-120 434.5 253 77.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 5.8e-120 434.5 254 77.2
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 7.5e-120 434.1 253 76.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 9.8e-120 433.7 253 77.1
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 9.8e-120 433.7 253 77.1
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 9.8e-120 433.7 246 78.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.7e-119 433.0 231 80.5
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.9e-119 432.2 251 77.7
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 3.7e-119 431.8 254 76.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 4.9e-119 431.4 238 79.4
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.9e-119 431.4 251 77.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 8.3e-119 430.6 253 77.9
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.3e-119 430.6 245 78.4
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 8.3e-119 430.6 263 76.0
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.4e-118 429.9 235 80.4
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-118 429.9 251 77.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.9e-118 429.5 241 78.8
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.9e-118 429.5 247 78.1
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.9e-118 429.5 235 80.4
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.2e-118 428.7 235 80.4
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 5.4e-118 427.9 241 78.0
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 5.4e-118 427.9 236 82.2
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 5.4e-118 427.9 225 84.4
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.2e-118 427.2 244 78.7
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.2e-117 426.8 240 80.0
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.6e-117 426.4 238 80.7
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.6e-117 426.4 253 75.9
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 2.0e-117 426.0 233 79.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.7e-117 425.6 249 75.1
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.7e-117 425.6 238 78.2
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 3.5e-117 425.2 233 81.5
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 3.5e-117 425.2 239 78.7
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.5e-117 425.2 242 76.9
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 3.5e-117 425.2 237 79.3
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 4.6e-117 424.9 236 79.7
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 6.0e-117 424.5 246 76.0
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 6.0e-117 424.5 237 80.6
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 7.8e-117 424.1 256 74.6
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 7.8e-117 424.1 233 81.1
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.0e-116 423.7 238 77.7
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.0e-116 423.7 243 76.5
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.3e-116 423.3 255 76.9
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.7e-116 422.9 235 78.3
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.0e-116 422.2 242 76.9
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.0e-116 422.2 233 79.4
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.9e-116 421.8 237 78.5
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 5.0e-116 421.4 244 77.0
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.3e-115 418.3 241 76.3
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.3e-115 418.3 248 75.0
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 5.6e-115 417.9 246 76.4
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 9.5e-115 417.2 259 74.5
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-114 416.8 247 74.9
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 2.8e-114 415.6 237 77.6
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.6e-114 415.2 233 79.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.2e-114 414.5 226 81.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 8.0e-114 414.1 254 74.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.1e-113 413.7 243 75.3
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.3e-113 412.5 232 78.0
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.0e-113 411.8 254 74.4
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 4.0e-113 411.8 234 77.4
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 6.8e-113 411.0 232 78.4
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.6e-112 409.1 245 73.1
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 2.6e-112 409.1 252 72.6
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.4e-112 408.7 239 74.5
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 7.5e-112 407.5 235 77.4
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.2e-111 406.0 252 71.4
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.4e-110 403.3 246 72.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.2e-110 402.1 232 76.3
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 3.2e-110 402.1 246 74.0
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 5.4e-110 401.4 233 76.0
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 7.0e-110 401.0 223 78.5
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 7.0e-110 401.0 239 74.5
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.2e-109 400.2 244 75.0
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 6.0e-109 397.9 251 72.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.3e-108 396.7 251 72.5
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.3e-108 396.7 250 71.2
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 3.9e-108 395.2 251 71.3
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 3.9e-108 395.2 246 73.2
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.1e-105 387.1 237 72.6
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.3e-105 386.0 242 71.1
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 6.8e-105 384.4 237 71.7
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.5e-104 383.3 217 79.3
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.0e-104 382.9 249 70.3
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.5e-99 366.7 235 70.2
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.5e-96 356.7 223 69.5
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.2e-95 352.8 237 64.1
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.9e-95 352.4 240 65.8
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 4.9e-95 351.7 243 64.2
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 9.2e-94 347.4 243 65.0
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 7.8e-93 344.4 249 62.2
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 7.8e-93 344.4 255 63.9
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 2.3e-92 342.8 225 67.6
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 4.8e-82 308.5 182 79.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 9.9e-80 300.8 158 82.3
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.8e-79 298.9 244 59.4
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 5.4e-78 295.0 158 80.4
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.6e-61 240.4 178 61.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.7e-55 220.3 231 46.3
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.4e-49 200.7 232 45.7
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.9e-47 193.0 201 51.2
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.5e-40 170.6 96 80.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 3.5e-32 142.9 93 72.0
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 5.5e-30 135.6 116 55.2
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.5e-24 116.3 135 46.7
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 5.5e-14 82.4 51 62.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 2.3e-12 77.0 65 56.9


User provided reference genes

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