Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 5.9e-48 193.7 90 100.0
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.2e-40 169.5 90 84.4
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 4.6e-40 167.5 90 84.4
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.3e-38 161.4 85 81.2
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 4.3e-38 161.0 87 80.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 8.0e-37 156.8 89 76.4
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 76.4
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.3e-36 155.2 89 78.7
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.3e-36 155.2 82 81.7
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.3e-36 155.2 89 77.5
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 6.8e-36 153.7 89 76.4
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 8.9e-36 153.3 90 77.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.5e-35 152.5 91 75.8
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.6e-35 151.8 89 76.4
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.4e-35 151.4 78 84.6
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.4e-35 151.4 81 81.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.8e-35 150.6 89 75.3
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 7.5e-35 150.2 81 79.0
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 9.8e-35 149.8 83 77.1
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 9.8e-35 149.8 80 81.2
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 9.8e-35 149.8 80 81.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.3e-34 149.4 81 77.8
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.3e-34 149.4 89 76.4
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.3e-34 149.4 81 79.0
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.3e-34 149.4 83 80.7
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.3e-34 149.4 79 81.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.7e-34 149.1 79 82.3
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.7e-34 149.1 89 75.3
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.7e-34 149.1 82 79.3
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.7e-34 149.1 81 76.5
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.7e-34 149.1 81 76.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.2e-34 148.7 83 75.9
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.2e-34 148.7 77 80.5
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 2.9e-34 148.3 89 74.2
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.9e-34 148.3 89 73.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.7e-34 147.9 93 73.1
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.9e-34 147.5 83 79.5
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 4.9e-34 147.5 89 75.3
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 4.9e-34 147.5 89 73.0
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 4.9e-34 147.5 89 75.3
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 6.4e-34 147.1 76 80.3
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 6.4e-34 147.1 89 74.2
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 8.3e-34 146.7 90 73.3
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.1e-33 146.4 81 80.2
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.1e-33 146.4 89 74.2
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.1e-33 146.4 82 76.8
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-33 146.4 89 74.2
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.1e-33 146.4 75 81.3
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.4e-33 146.0 84 77.4
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.4e-33 146.0 75 82.7
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.4e-33 146.0 81 74.1
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.4e-33 145.2 84 76.2
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.2e-33 144.8 86 75.6
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.2e-33 144.8 87 74.7
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 4.1e-33 144.4 93 72.0
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 5.4e-33 144.1 81 79.0
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.0e-33 143.7 80 77.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 9.2e-33 143.3 79 78.5
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.2e-32 142.9 82 78.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.2e-32 142.9 84 76.2
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.6e-32 142.5 90 70.0
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.7e-32 141.7 90 72.2
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 3.5e-32 141.4 82 76.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 3.5e-32 141.4 81 75.3
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 6.0e-32 140.6 89 71.9
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.0e-32 140.6 90 71.1
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 7.8e-32 140.2 89 70.8
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.0e-31 139.8 96 70.8
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.0e-31 139.8 89 70.8
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.3e-31 139.4 80 75.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.3e-31 139.4 87 70.1
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.3e-31 138.7 77 74.0
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 2.3e-31 138.7 89 68.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 6.6e-31 137.1 74 77.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 8.6e-31 136.7 90 70.0
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 4.3e-30 134.4 96 67.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 5.6e-30 134.0 74 77.0
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 8.9e-28 126.7 132 48.5
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 3.4e-27 124.8 140 47.9
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 5.2e-20 100.9 82 58.5
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.6e-19 98.6 76 59.2
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 9.2e-17 90.1 199 32.7
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.5e-16 88.2 42 85.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 3.9e-15 84.7 40 85.0
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.9e-15 84.7 39 89.7
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 9.6e-14 80.1 39 84.6
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 2.8e-13 78.6 42 76.2
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.6e-13 78.2 49 69.4
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 9.0e-12 73.6 50 64.0
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 3.4e-11 71.6 50 62.0
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 3.4e-11 71.6 50 64.0
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.1e-09 66.6 37 75.7
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 4.2e-09 64.7 44 61.4
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.6e-08 62.8 28 89.3
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 6.0e-08 60.8 78 42.3
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.0e-07 60.1 78 41.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.3e-07 58.9 78 39.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.3e-07 58.9 78 41.0
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 3.0e-07 58.5 77 37.7
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 3.0e-07 58.5 86 38.4
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.9e-07 58.2 78 39.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.9e-07 58.2 78 39.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 5.1e-07 57.8 78 39.7
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 5.1e-07 57.8 85 37.6
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 5.1e-07 57.8 78 38.5
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 6.6e-07 57.4 95 37.9
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 6.6e-07 57.4 78 41.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.5e-06 56.2 78 39.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.5e-06 56.2 78 39.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.5e-06 56.2 82 39.0
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 4.3e-06 54.7 78 38.5


User provided reference genes

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