Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 6.2e-132 474.2 246 100.0
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-59 234.2 238 55.9
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 7.8e-58 228.0 245 54.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 3.0e-57 226.1 242 52.5
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 6.8e-54 214.9 241 51.9
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.4e-53 212.6 234 53.8
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 6.4e-52 208.4 241 52.7
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.4e-51 207.2 240 50.8
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.2e-50 204.1 253 50.6
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 6.0e-50 201.8 239 51.5
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.0e-50 201.8 248 50.0
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.3e-49 200.7 160 64.4
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 3.0e-49 199.5 213 53.1
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.5e-48 197.2 248 48.0
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.5e-48 197.2 248 48.4
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 2.5e-48 196.4 236 50.0
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 5.6e-48 195.3 240 47.1
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.6e-48 195.3 232 47.8
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 5.6e-48 195.3 245 46.5
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.6e-47 193.7 182 59.9
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 2.1e-47 193.4 248 49.2
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 2.8e-47 193.0 222 52.3
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.3e-46 189.9 203 52.7
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 3.1e-46 189.5 247 49.0
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 3.1e-46 189.5 248 48.0
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 6.8e-46 188.3 199 53.8
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.0e-45 186.8 184 53.8
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 2.6e-45 186.4 239 48.5
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 4.4e-45 185.7 251 49.0
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 5.8e-45 185.3 237 48.1
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 7.5e-45 184.9 236 47.9
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 9.8e-45 184.5 225 48.9
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.3e-44 184.1 176 56.8
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.7e-44 183.7 222 50.5
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 2.2e-44 183.3 225 48.9
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 8.3e-44 181.4 165 57.0
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.4e-43 179.9 209 50.2
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 3.2e-43 179.5 240 47.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 4.1e-43 179.1 245 44.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 5.4e-43 178.7 239 43.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 7.1e-43 178.3 262 45.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.6e-42 177.2 246 44.3
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.1e-42 176.8 190 51.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.1e-42 176.8 242 47.5
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.7e-42 176.4 237 45.6
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 4.6e-42 175.6 229 48.9
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 6.0e-42 175.3 172 51.7
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 6.0e-42 175.3 238 45.4
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 7.8e-42 174.9 185 50.3
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.3e-41 174.1 180 52.8
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.7e-41 173.7 189 51.9
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.9e-41 172.6 233 44.6
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.9e-41 172.6 255 42.0
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 6.6e-41 171.8 151 56.3
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 8.6e-41 171.4 194 49.0
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.1e-40 171.0 171 54.4
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-40 171.0 166 54.8
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-40 170.6 166 54.2
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-40 170.6 157 56.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-40 170.6 166 54.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.5e-40 170.6 253 41.5
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.5e-40 170.6 190 50.5
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.9e-40 170.2 151 58.3
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.9e-40 170.2 229 45.4
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 4.3e-40 169.1 169 53.3
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 9.5e-40 167.9 189 48.7
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 1.6e-39 167.2 234 47.0
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 3.6e-39 166.0 248 42.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 4.7e-39 165.6 154 55.8
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 1.8e-38 163.7 245 40.8
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 2.3e-38 163.3 212 44.3
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 4.0e-38 162.5 244 41.8
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.3e-36 157.5 183 48.6
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.9e-35 153.7 179 48.0
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.6e-31 140.6 229 41.0
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.1e-31 140.2 231 39.4
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.8e-28 129.4 182 43.4
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.1e-27 127.9 189 39.7
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 2.4e-27 126.7 190 40.0
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 4.2e-27 125.9 186 38.2
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.3e-27 124.8 190 36.8
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.7e-26 123.2 159 40.3
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.7e-26 123.2 162 42.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 4.6e-26 122.5 194 38.7
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 7.8e-26 121.7 163 39.9
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.0e-25 121.3 158 42.4
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 1.3e-25 120.9 244 33.2
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 3.9e-25 119.4 163 38.7
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 3.9e-25 119.4 163 38.7
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 8.7e-25 118.2 199 36.7
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.1e-24 117.9 156 41.0
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.5e-24 117.5 177 34.5
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.9e-24 117.1 154 40.9
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.5e-24 116.7 130 50.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 4.3e-24 115.9 151 39.1
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 5.6e-24 115.5 151 39.1
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 9.6e-24 114.8 155 40.0
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 9.6e-24 114.8 159 39.0
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.3e-23 114.4 163 38.7
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.6e-23 114.0 128 43.0
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.2e-23 112.1 147 42.2
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 6.2e-23 112.1 154 39.6
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.4e-22 110.9 128 42.2
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.8e-22 110.5 151 40.4
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 6.9e-22 108.6 155 38.7
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.2e-21 107.8 153 40.5
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.5e-21 107.5 151 41.7
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-21 107.5 157 38.9
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.0e-21 107.1 149 41.6
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.6e-21 106.7 150 38.7
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.3e-20 104.4 156 39.7
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-20 104.4 156 39.1
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 2.2e-20 103.6 197 33.0
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.2e-20 103.6 159 35.8
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 2.2e-20 103.6 100 55.0
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.9e-20 103.2 161 34.2
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.9e-20 103.2 184 34.2
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 8.4e-20 101.7 184 33.7
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-19 100.9 181 33.1
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.4e-19 100.9 181 33.1
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 4.2e-19 99.4 151 36.4
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.6e-18 97.4 117 41.9
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.6e-18 97.4 133 39.1
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.7e-18 96.7 169 35.5
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.7e-18 96.7 163 35.6
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 2.7e-18 96.7 136 42.6
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 6.0e-18 95.5 134 35.8
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 6.0e-18 95.5 133 37.6
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 6.0e-18 95.5 127 37.8
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-17 94.4 161 37.3
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.8e-17 94.0 134 38.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 5.1e-17 92.4 166 32.5
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 5.1e-17 92.4 157 35.7
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 6.7e-17 92.0 78 61.5
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-17 92.0 163 34.4
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 6.7e-17 92.0 163 34.4
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 6.7e-17 92.0 163 34.4
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-16 91.3 182 33.0
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.1e-16 91.3 182 33.0
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-16 90.9 163 35.0
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.3e-16 89.7 154 31.8
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 4.3e-16 89.4 137 35.8
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 5.6e-16 89.0 130 33.8
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 7.4e-16 88.6 87 44.8
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.8e-15 86.7 130 32.3
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.8e-15 86.7 173 33.5
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.6e-15 86.3 106 36.8
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 3.6e-15 86.3 119 37.0
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.1e-14 84.7 112 42.0
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.8e-14 84.0 161 31.7
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.0e-14 82.8 121 33.9
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 9.0e-14 81.6 117 34.2
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.6e-13 80.1 124 34.7
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 1.4e-11 74.3 90 50.0
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.9e-11 73.9 90 37.8
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 5.5e-11 72.4 101 35.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 6.0e-10 68.9 109 36.7
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.8e-09 67.4 107 34.6
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 8.7e-09 65.1 166 26.5
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 7.4e-08 62.0 60 46.7


User provided reference genes

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