Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 0.0e+00 1664.8 1004 100.0
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.0e-186 655.2 1048 48.4
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.1e-52 213.0 1027 31.1
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.6e-48 199.1 291 51.5
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 6.0e-48 197.2 1015 31.4
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.4e-43 181.4 1013 29.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 8.4e-42 176.8 1026 31.7
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 7.8e-40 170.2 411 40.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 5.6e-38 164.1 1046 27.2
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.8e-37 161.8 302 41.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.2e-35 156.4 227 45.8
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 2.0e-35 155.6 263 43.3
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.5e-35 154.5 301 46.5
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 5.8e-35 154.1 270 42.2
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.8e-35 154.1 263 43.0
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.4e-33 148.7 273 41.4
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 2.4e-33 148.7 1016 28.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.0e-31 143.3 268 41.0
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.0e-31 143.3 265 41.5
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.0e-31 141.7 445 32.6
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.1e-30 139.8 498 32.9
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.1e-30 139.8 295 39.7
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.6e-30 137.5 1031 25.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.3e-29 136.3 1072 25.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.8e-29 135.2 231 51.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 9.0e-28 130.2 528 30.7
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.2e-27 129.8 290 37.6
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.0e-27 129.0 257 39.7
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 3.4e-27 128.3 320 35.6
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.9e-26 125.2 280 37.1
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 3.8e-26 124.8 228 43.0
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.9e-26 124.4 230 50.9
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.4e-26 124.0 255 36.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.1e-25 123.2 287 42.9
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.4e-25 122.1 280 38.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.4e-25 122.1 131 58.8
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.4e-25 122.1 274 38.0
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.2e-25 121.7 276 36.2
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 5.5e-25 120.9 281 36.7
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 9.3e-25 120.2 299 39.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 9.3e-25 120.2 273 41.4
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-24 119.8 264 37.9
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.2e-24 119.8 278 36.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.2e-24 119.8 229 41.9
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.2e-24 119.8 276 39.1
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.6e-24 119.4 293 35.2
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.5e-24 118.2 282 35.8
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.0e-23 116.7 250 37.6
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.8e-23 115.9 282 37.9
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.1e-23 114.4 525 29.3
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 5.1e-23 114.4 517 27.7
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 6.7e-23 114.0 503 27.8
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.1e-22 113.2 230 38.3
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.9e-22 112.5 519 28.1
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 2.5e-22 112.1 261 37.5
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 5.6e-22 110.9 233 39.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.6e-22 110.9 283 41.0
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 5.6e-22 110.9 225 40.4
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 7.4e-22 110.5 276 34.4
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.3e-21 109.8 246 39.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.3e-21 109.8 261 37.2
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.1e-21 109.0 256 37.9
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.7e-21 108.2 273 35.5
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 3.7e-21 108.2 252 48.0
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 8.2e-21 107.1 266 37.6
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-20 106.7 289 34.6
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-20 106.7 288 34.4
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.1e-20 106.7 458 29.5
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-20 105.5 124 53.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.1e-20 105.1 233 40.8
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.1e-20 105.1 505 28.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 4.0e-20 104.8 280 35.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 5.3e-20 104.4 253 35.6
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 5.3e-20 104.4 253 35.6
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 5.3e-20 104.4 253 35.6
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.9e-20 104.0 257 37.7
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 9.0e-20 103.6 253 34.8
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 9.0e-20 103.6 253 34.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 9.0e-20 103.6 487 31.0
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.5e-19 102.8 555 26.8
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.0e-19 102.4 264 36.0
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.6e-19 102.1 504 29.8
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.6e-19 100.5 276 34.1
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.0e-18 100.1 297 31.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-18 99.8 413 28.8
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-18 99.8 148 43.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.3e-18 99.8 148 43.9
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.3e-18 99.8 143 47.6
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-18 99.4 477 29.6
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-18 99.0 276 35.9
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 8.4e-18 97.1 223 35.9
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-17 96.7 478 27.6
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.1e-17 96.7 238 35.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.4e-17 96.3 109 53.2
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-17 95.5 512 27.5
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.5e-17 95.5 276 34.4
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 3.2e-17 95.1 237 35.0
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 5.5e-17 94.4 509 28.1
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 7.1e-17 94.0 418 28.0
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 7.1e-17 94.0 264 34.1
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.1e-17 94.0 272 32.7
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 7.1e-17 94.0 245 35.5
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 9.3e-17 93.6 286 34.3
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.6e-16 92.8 316 33.2
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.1e-16 92.4 485 27.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.1e-16 92.4 275 32.0
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 2.7e-16 92.0 155 45.8
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 4.6e-16 91.3 688 25.7
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.6e-16 91.3 155 41.9
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 7.9e-16 90.5 523 27.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.9e-15 88.2 152 40.8
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 6.7e-15 87.4 139 43.9
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.9e-14 85.9 244 36.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.9e-14 85.9 240 33.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 3.3e-14 85.1 147 43.5
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 7.4e-14 84.0 166 40.4
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 7.4e-14 84.0 244 34.8
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.8e-13 82.0 158 38.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.8e-13 82.0 469 31.1
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.4e-12 79.7 278 32.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.8e-12 79.3 297 31.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.1e-12 78.2 263 29.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 4.1e-12 78.2 275 31.3
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 5.3e-12 77.8 164 42.1
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 5.3e-12 77.8 307 30.6
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.2e-11 76.6 1020 26.4
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.2e-11 76.6 278 35.3
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.2e-11 76.6 104 46.2
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.5e-11 76.3 129 43.4
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.0e-10 73.6 128 41.4
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.2e-10 72.4 261 29.9
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.9e-10 72.0 533 27.6
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 6.5e-10 70.9 130 44.6
Ciclev10023587m.g Citrus clementina HOM05D004299 ORTHO05D003557 8.5e-10 70.5 147 46.3
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 4.2e-09 68.2 127 43.3
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.2e-08 66.6 514 23.7
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 1.4e-07 63.2 104 46.2
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.4e-07 63.2 39 74.4
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.4e-07 63.2 108 38.9
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.8e-07 62.8 135 34.1
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 6.7e-07 60.8 137 35.0
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.1e-06 60.1 161 35.4
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.5e-06 59.7 57 56.1
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 1.5e-06 59.7 98 41.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.9e-06 59.3 39 66.7
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.9e-06 59.3 146 33.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 2.5e-06 58.9 37 73.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 2.5e-06 58.9 37 73.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 2.5e-06 58.9 40 67.5
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 4.3e-06 58.2 63 50.8
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 5.7e-06 57.8 127 37.0
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 9.7e-06 57.0 188 29.3


User provided reference genes

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