Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1708.7 898 100.0
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1587.8 899 93.0
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 0.0e+00 1265.8 900 75.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1263.4 896 75.4
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1245.3 897 74.4
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1238.4 900 73.3
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 0.0e+00 1231.9 897 74.8
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1230.7 897 74.2
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 0.0e+00 1217.6 900 74.1
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 0.0e+00 1203.0 901 73.1
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 0.0e+00 1193.3 900 73.2
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 0.0e+00 1184.1 900 71.8
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 0.0e+00 1181.4 900 71.2
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 0.0e+00 1175.2 895 72.0
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1156.4 901 68.6
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1151.0 905 70.1
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1142.1 905 67.7
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1139.8 905 67.6
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 0.0e+00 1139.0 862 73.3
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1111.3 906 66.2
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 0.0e+00 1110.9 905 68.2
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1109.7 906 66.2
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 0.0e+00 1109.0 900 68.6
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1106.3 905 68.1
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 0.0e+00 1099.7 903 68.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1096.3 910 64.7
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 0.0e+00 1090.9 889 67.3
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 0.0e+00 1090.9 902 66.5
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 0.0e+00 1082.8 899 67.7
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 0.0e+00 1080.9 906 66.7
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 0.0e+00 1080.1 860 68.8
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.2e-311 1072.8 904 64.9
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.5e-311 1072.0 906 64.7
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.4e-311 1070.5 904 64.8
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 2.1e-310 1068.9 903 65.4
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.9e-309 1064.7 888 68.7
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.1e-308 1063.1 908 66.1
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.5e-308 1062.8 902 64.9
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.5e-308 1062.8 908 66.3
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 4.3e-308 1061.2 900 66.7
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.7e-307 1058.1 888 68.5
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.4e-306 1055.4 894 66.0
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.5e-305 1052.7 888 68.4
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 4.5e-305 1051.2 902 64.9
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.5e-305 1051.2 891 68.6
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.4e-303 1046.2 908 64.0
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.2e-303 1045.0 904 64.2
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 4.2e-303 1044.6 900 65.7
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 5.5e-303 1044.3 916 64.5
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 9.4e-303 1043.5 916 64.6
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.6e-302 1042.7 801 72.9
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.5e-300 1036.2 887 65.2
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.5e-300 1036.2 904 65.3
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.5e-300 1036.2 902 66.3
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.7e-299 1031.6 901 65.4
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 4.8e-299 1031.2 900 65.2
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 6.3e-299 1030.8 913 64.6
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 1.8e-298 1029.2 913 64.5
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 1.8e-298 1029.2 887 62.5
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 7.7e-297 1023.8 796 71.2
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.7e-296 1022.7 916 64.2
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 2.9e-296 1021.9 796 71.1
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.5e-295 1019.6 898 64.7
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 2.5e-295 1018.8 775 71.7
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 5.5e-295 1017.7 881 63.6
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.6e-294 1016.1 916 63.2
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 8.0e-294 1013.8 863 66.5
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 6.7e-293 1010.7 885 63.8
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 2.6e-292 1008.8 907 64.2
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 3.3e-292 1008.4 897 64.7
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 5.7e-292 1007.7 884 63.5
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 1.3e-291 1006.5 899 63.4
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 3.1e-290 1001.9 900 63.8
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 9.4e-287 990.3 899 63.4
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.6e-286 989.6 901 63.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 6.8e-285 984.2 897 63.0
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.5e-284 983.0 902 60.6
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.9e-279 966.1 861 64.3
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 7.5e-276 954.1 913 60.2
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 6.3e-275 951.0 905 61.5
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 2.9e-272 942.2 863 64.0
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 9.5e-271 937.2 900 58.9
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 6.8e-269 931.0 901 60.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 6.8e-269 931.0 861 61.8
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 3.4e-268 928.7 902 61.1
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 2.5e-263 912.5 905 57.9
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 4.7e-262 908.3 906 60.4
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 8.0e-262 907.5 911 58.4
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.9e-259 899.0 903 58.9
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 8.3e-259 897.5 903 60.0
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 7.3e-255 884.4 903 59.2
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.4e-253 880.2 903 57.0
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 5.2e-253 878.2 902 58.1
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 3.4e-252 875.5 873 60.0
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 7.1e-250 867.8 771 63.0
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.7e-249 865.9 899 56.6
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.9e-248 862.1 887 57.9
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.2e-246 854.7 904 58.5
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 8.1e-246 854.4 884 58.4
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 7.8e-241 837.8 884 58.1
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.0e-240 837.4 905 58.0
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.9e-239 833.2 868 57.9
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 1.9e-239 833.2 884 57.9
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 3.6e-238 828.9 897 57.5
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.9e-237 824.7 865 57.9
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 5.8e-236 821.6 896 56.8
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 9.9e-236 820.8 860 57.2
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.4e-234 817.0 895 57.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 5.1e-232 808.5 847 58.3
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 8.1e-230 801.2 899 54.3
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 4.0e-229 798.9 730 63.8
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.5e-228 795.4 865 58.0
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.7e-227 793.5 902 52.8
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 2.9e-227 792.7 879 57.1
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.9e-227 792.7 899 54.4
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 1.4e-226 790.4 868 52.8
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 3.3e-223 779.2 845 57.2
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 7.6e-220 768.1 905 52.6
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 9.9e-220 767.7 845 54.7
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 6.4e-219 765.0 883 53.7
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.9e-218 763.5 903 54.2
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 3.9e-216 755.7 879 55.7
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.1e-215 754.2 844 55.0
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 4.3e-215 752.3 862 54.5
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 7.6e-212 741.5 759 58.5
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 3.8e-211 739.2 876 53.9
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.6e-206 723.8 807 56.3
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 3.7e-206 722.6 910 51.6
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 5.3e-205 718.8 877 53.0
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 5.3e-205 718.8 910 51.6
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 6.9e-205 718.4 896 52.1
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 4.5e-204 715.7 876 52.6
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 3.2e-202 709.5 876 52.6
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 3.6e-201 706.1 862 52.7
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.8e-200 703.7 862 52.7
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 3.3e-199 699.5 894 51.2
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.8e-197 693.7 764 55.6
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 1.2e-196 691.0 915 50.6
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 2.6e-196 689.9 930 49.1
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 5.3e-189 665.6 915 50.1
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 5.3e-189 665.6 918 49.9
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 7.7e-188 661.8 873 51.7
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 3.0e-184 649.8 776 52.6
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.8e-181 640.6 919 48.2
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 3.7e-174 616.3 845 49.5
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 6.1e-169 599.0 842 46.9
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.3e-166 591.3 884 47.4
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 1.6e-153 547.7 747 48.9
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 4.1e-149 533.1 905 42.9
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 1.8e-144 517.7 897 44.4
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 5.6e-138 496.1 503 58.8
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.9e-133 481.1 641 52.4
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 3.2e-133 480.3 916 41.8
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 2.4e-128 464.2 749 47.1
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.6e-123 446.0 405 64.9
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.7e-118 431.4 902 38.4
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.9e-117 427.9 909 37.6
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.5e-116 423.7 926 39.8
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 6.0e-116 422.9 935 40.2
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 3.6e-113 413.7 922 38.3
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.0e-107 394.0 929 39.2
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.3e-106 390.2 929 39.0
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 4.6e-100 370.2 876 38.0
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 7.9e-92 342.8 314 56.7
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.3e-88 330.1 996 34.8
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.7e-81 308.5 882 36.1
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.4e-72 278.9 425 49.2
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 3.1e-72 277.7 360 44.7
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 5.0e-70 270.4 378 47.4
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.2e-63 249.2 358 45.3
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.0e-62 246.1 291 49.8
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.9e-61 241.9 506 37.7
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 3.2e-61 241.1 262 65.3
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 1.0e-59 236.1 258 53.1
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 2.9e-54 218.0 364 40.1
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.9e-54 218.0 331 42.3
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.5e-53 214.9 957 31.5
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 3.1e-48 198.0 301 42.2
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.9e-45 188.7 176 55.1
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 5.2e-43 180.6 97 96.9
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.5e-42 176.8 716 29.2
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.2e-39 169.5 182 56.6
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.2e-17 95.5 159 39.0
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.6e-12 79.3 327 25.4
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 7.8e-07 60.5 40 67.5


User provided reference genes

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