Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 3.5e-104 381.7 202 100.0
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 7.3e-70 267.7 202 67.8
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 5.2e-68 261.5 202 67.3
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 8.3e-66 254.2 199 65.8
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.1e-65 253.8 198 65.7
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.3e-62 242.3 200 62.5
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 9.5e-62 240.7 200 64.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.8e-61 239.2 199 62.3
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 4.0e-60 235.3 199 62.3
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.2e-60 235.0 202 61.4
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 6.8e-60 234.6 202 61.4
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 2.2e-58 229.6 200 62.5
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 6.4e-58 228.0 199 56.3
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 4.1e-57 225.3 200 56.0
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.6e-56 223.4 202 58.9
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.6e-56 223.4 200 58.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.1e-56 223.0 199 60.3
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.7e-56 222.6 199 56.3
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.5e-56 222.2 202 58.9
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 4.6e-56 221.9 200 57.5
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.9e-55 218.8 198 56.6
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 6.6e-55 218.0 199 58.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 3.3e-54 215.7 199 60.3
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 4.3e-54 215.3 199 53.3
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 7.3e-54 214.5 198 57.1
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-53 213.8 200 56.0
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-53 213.4 200 56.0
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-53 213.4 200 56.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.7e-53 211.8 198 56.6
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.7e-53 211.8 198 56.1
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 6.8e-52 208.0 199 56.8
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 9.9e-51 204.1 200 55.0
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.3e-50 203.8 199 54.3
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.4e-49 200.3 199 55.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 2.4e-49 199.5 200 53.5
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.4e-49 199.5 200 54.0
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 5.4e-49 198.4 199 53.3
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 9.2e-49 197.6 200 53.0
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 6.0e-48 194.9 199 55.8
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.1e-46 190.7 200 51.5
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 1.6e-45 186.8 191 54.5
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.1e-45 186.4 200 49.0
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.4e-44 183.7 198 48.0
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.1e-44 182.6 187 52.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 5.2e-44 181.8 201 50.2
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.0e-43 179.9 195 50.3
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 2.6e-43 179.5 199 45.2
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 4.4e-43 178.7 201 50.7
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.3e-42 177.2 202 44.1
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.3e-42 177.2 202 44.1
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.8e-42 175.6 200 44.5
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 1.9e-41 173.3 214 47.2
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.2e-40 170.6 199 44.2
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 5.1e-39 165.2 202 42.1
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 5.1e-39 165.2 194 45.9
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 2.1e-37 159.8 271 38.7
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 6.2e-37 158.3 192 43.2
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.5e-35 153.7 200 43.0
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.7e-34 150.2 200 43.0
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.9e-34 149.4 202 40.1
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 6.4e-34 148.3 202 37.6
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 4.2e-33 145.6 202 36.6
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 9.3e-33 144.4 197 40.1
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 1.2e-32 144.1 202 37.1
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 1.2e-32 144.1 202 37.1
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.3e-31 140.6 107 68.2
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 2.3e-31 139.8 202 36.6
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.5e-30 137.1 199 39.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 2.5e-30 136.3 197 38.6
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 4.3e-30 135.6 198 39.9
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.8e-29 132.1 107 66.4
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.1e-28 131.0 200 41.5
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 4.0e-28 129.0 196 38.3
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.3e-28 128.6 190 43.2
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 9.0e-28 127.9 93 65.6
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 9.9e-27 124.4 187 36.4
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.3e-26 124.0 148 48.6
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 8.4e-26 121.3 107 61.7
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.1e-25 120.9 107 58.9
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 1.2e-24 117.5 107 58.9
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.6e-24 117.1 169 42.6
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 6.0e-24 115.2 107 57.9
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.8e-23 113.6 107 58.9
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.1e-22 110.9 107 55.1
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.9e-22 110.2 107 55.1
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.5e-22 109.8 107 56.1
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 2.5e-22 109.8 108 58.3
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.3e-22 109.4 86 61.6
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 4.3e-22 109.0 107 56.1
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.4e-22 108.2 107 57.9
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 9.6e-22 107.8 107 56.1
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 1.6e-21 107.1 107 54.2
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 3.7e-21 105.9 130 45.4
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 4.8e-21 105.5 86 59.3
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.2e-21 105.1 107 57.0
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 8.1e-21 104.8 113 53.1
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.1e-21 104.8 107 57.0
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.4e-20 103.2 92 51.1
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 2.4e-20 103.2 187 36.4
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 2.4e-20 103.2 165 38.2
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 3.1e-20 102.8 107 53.3
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 6.9e-20 101.7 163 39.3
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.2e-19 100.9 107 50.5
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.6e-19 99.8 74 70.3
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.6e-19 99.8 58 75.9
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.7e-18 97.1 57 77.2
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 3.8e-18 95.9 101 52.5
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 8.4e-18 94.7 58 72.4
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.9e-17 93.6 107 50.5
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 1.6e-16 90.5 107 45.8
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.6e-16 90.5 79 60.8
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.6e-16 90.5 127 46.5
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 6.0e-16 88.6 62 64.5
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.9e-16 88.2 79 59.5
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.0e-15 87.8 79 59.5
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.3e-15 86.7 105 44.8
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 3.0e-15 86.3 81 49.4
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 3.0e-15 86.3 81 49.4
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 3.9e-15 85.9 117 46.2
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 3.9e-15 85.9 138 35.5
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 5.1e-15 85.5 68 57.4
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 1.1e-14 84.3 61 59.0
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.9e-14 83.6 84 46.4
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.5e-14 83.2 97 52.6
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 2.5e-14 83.2 58 67.2
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 2.5e-14 83.2 107 43.9
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 7.4e-14 81.6 107 45.8
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.3e-13 80.9 197 28.9
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.3e-13 80.9 184 31.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.6e-13 80.5 117 45.3
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.8e-13 79.7 56 58.9
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 6.2e-13 78.6 56 58.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.1e-12 77.8 58 63.8
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 3.1e-12 76.3 52 67.3
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 3.1e-12 76.3 52 67.3
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 2.0e-11 73.6 73 52.1
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.4e-11 72.8 108 39.8
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.5e-11 72.4 73 56.2
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 5.8e-11 72.0 156 30.1
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.0e-10 71.2 133 33.1
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.2e-08 64.3 109 38.5
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-08 63.9 100 37.0
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.1e-08 63.5 107 37.4
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 3.5e-08 62.8 100 36.0
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.5e-08 62.8 107 34.6
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 6.1e-08 62.0 105 36.2
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 1.5e-06 57.4 100 35.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 3.3e-06 56.2 115 35.7
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 5.7e-06 55.5 60 48.3
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 9.7e-06 54.7 100 34.0
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 9.7e-06 54.7 100 34.0
TPR.G18966 Trifolium pratense HOM05D004264 ORTHO05D004680 9.7e-06 54.7 61 45.9


User provided reference genes

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