Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G108600 Manihot esculenta HOM05D006801 ORTHO05D008490 1.1e-95 353.2 166 100.0
Haze_21041 Corylus avellana HOM05D006801 ORTHO05D008490 1.5e-81 306.2 165 86.7
TWI74G0346 Tripterygium wilfordii HOM05D006801 ORTHO05D008490 1.5e-81 306.2 165 85.5
Gohir.A04G094200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 4.4e-81 304.7 164 83.5
COL.COLO4_14495 Corchorus olitorius HOM05D006801 ORTHO05D008490 5.8e-81 304.3 164 83.5
QL07p034435 Quercus lobata HOM05D006801 ORTHO05D008490 5.8e-81 304.3 164 86.0
Gorai.012G117400 Gossypium raimondii HOM05D006801 ORTHO05D008490 7.5e-81 303.9 164 83.5
Gohir.D04G133600 Gossypium hirsutum HOM05D006801 ORTHO05D008490 3.7e-80 301.6 164 82.9
Cpa.g.sc120.28 Carica papaya HOM05D006801 ORTHO05D008490 6.4e-80 300.8 165 82.4
Lj2A70T41 Lonicera japonica HOM05D006801 ORTHO05D008490 6.4e-80 300.8 165 82.4
arahy.Tifrunner.gnm1.ann1.711CF1 Arachis hypogaea HOM05D006801 ORTHO05D008490 1.1e-79 300.1 163 82.8
Prupe.6G281700 Prunus persica HOM05D006801 ORTHO05D008490 1.1e-79 300.1 165 81.2
Ciclev10012687m.g Citrus clementina HOM05D006801 ORTHO05D008490 1.9e-79 299.3 165 82.4
arahy.Tifrunner.gnm1.ann1.SWS1EB Arachis hypogaea HOM05D006801 ORTHO05D008490 3.2e-79 298.5 163 82.8
TAR140G0003 Trochodendron aralioides HOM05D006801 ORTHO05D008490 4.6e-78 294.7 164 82.3
TAR623G0428 Trochodendron aralioides HOM05D006801 ORTHO05D008490 4.6e-78 294.7 164 82.3
Thecc.05G010700 Theobroma cacao HOM05D006801 ORTHO05D008490 6.0e-78 294.3 164 81.1
Nitab4.5_0005348g0010 Nicotiana tabacum HOM05D006801 ORTHO05D008490 7.8e-78 293.9 161 83.9
CiPaw.10G158900 Carya illinoinensis HOM05D006801 ORTHO05D008490 1.7e-77 292.7 166 80.7
Gorai.002G264900 Gossypium raimondii HOM05D006801 ORTHO05D008490 1.7e-77 292.7 164 79.3
Eucgr.A00595 Eucalyptus grandis HOM05D006801 ORTHO05D008490 2.3e-77 292.4 165 81.2
Peaxi162Scf01132g00023 Petunia axillaris HOM05D006801 ORTHO05D008490 5.0e-77 291.2 161 82.6
CAN.G41.4 Capsicum annuum HOM05D006801 ORTHO05D008490 8.6e-77 290.4 162 82.7
Cfa017164 Carpinus fangiana HOM05D006801 ORTHO05D008490 1.5e-76 289.7 165 82.4
Medtr4g017650 Medicago truncatula HOM05D006801 ORTHO05D008490 1.9e-76 289.3 165 78.8
Gohir.A01G228300 Gossypium hirsutum HOM05D006801 ORTHO05D008490 2.5e-76 288.9 164 78.0
MD04G1161900 Malus domestica HOM05D006801 ORTHO05D008490 2.5e-76 288.9 164 79.9
ClCG10G022380 Citrullus lanatus HOM05D006801 ORTHO05D008490 2.1e-75 285.8 168 81.0
Cc06_g01030 Coffea canephora HOM05D006801 ORTHO05D008490 2.8e-75 285.4 168 78.0
Potri.016G121000 Populus trichocarpa HOM05D006801 ORTHO05D008490 3.6e-75 285.0 166 80.1
CsaV3_3G033500 Cucumis sativus L. HOM05D006801 ORTHO05D008490 1.4e-74 283.1 163 80.4
Lsat_1_v5_gn_9_35501 Lactuca sativa HOM05D006801 ORTHO05D008490 1.8e-74 282.7 160 77.5
MELO3C009141.2 Cucumis melo HOM05D006801 ORTHO05D008490 3.1e-74 282.0 163 80.4
HanXRQChr10g0291491 Helianthus annuus HOM05D006801 ORTHO05D008490 3.1e-74 282.0 161 77.6
GSVIVG01030332001 Vitis vinifera HOM05D006801 ORTHO05D008490 5.2e-74 281.2 165 78.2
Atru.chr8.2288 Acer truncatum HOM05D006801 ORTHO05D008490 1.2e-73 280.0 160 80.0
DCAR_028865 Daucus carota HOM05D006801 ORTHO05D008490 1.2e-73 280.0 165 77.0
PGR031G3867 Punica granatum HOM05D006801 ORTHO05D008490 1.2e-73 280.0 165 78.2
Oeu033563.1 Olea europaea HOM05D006801 ORTHO05D008490 1.3e-72 276.6 169 76.3
TPR.G8225 Trifolium pratense HOM05D006801 ORTHO05D008490 1.3e-72 276.6 165 73.9
ECA247G2271 Erigeron canadensis HOM05D006801 ORTHO05D008490 4.9e-72 274.6 165 75.8
Psat7g243680 Pisum sativum HOM05D006801 ORTHO05D008490 6.4e-72 274.2 165 73.3
Lj3g0017579 Lotus japonicus HOM05D006801 ORTHO05D008490 8.3e-72 273.9 165 74.5
Ca_20198_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 1.1e-71 273.5 158 75.9
Nn2g13198 Nelumbo nucifera HOM05D006801 ORTHO05D008490 1.9e-71 272.7 166 77.7
MSTRG.18989 Avicennia marina HOM05D006801 ORTHO05D008490 2.4e-71 272.3 165 75.2
RcHm_v2.0_Chr3g0462371 Rosa chinensis HOM05D006801 ORTHO05D008490 7.0e-71 270.8 165 75.8
Aqoxy4G02453 Aquilegia oxysepala HOM05D006801 ORTHO05D008490 9.2e-71 270.4 167 75.4
THA.LOC104816206 Tarenaya hassleriana HOM05D006801 ORTHO05D008490 1.6e-70 269.6 165 74.5
FvH4_6g11060 Fragaria vesca HOM05D006801 ORTHO05D008490 4.6e-70 268.1 166 74.7
FAN14G3154 Fragaria x ananassa HOM05D006801 ORTHO05D008490 4.6e-70 268.1 166 74.7
Lalb_Chr12g0207061 Lupinus albus HOM05D006801 ORTHO05D008490 1.0e-69 266.9 165 72.7
AUR62030790 Chenopodium quinoa HOM05D006801 ORTHO05D008490 1.3e-69 266.5 166 71.7
Carub.0006s0052 Capsella rubella HOM05D006801 ORTHO05D008490 1.7e-69 266.2 162 73.5
Aa31LG1G22920 Aethionema arabicum HOM05D006801 ORTHO05D008490 2.3e-69 265.8 160 73.8
CANSAT35G1909 Cannabis sativa HOM05D006801 ORTHO05D008490 6.6e-69 264.2 166 74.1
Sc01g0005740 Simmondsia chinensis HOM05D006801 ORTHO05D008490 6.6e-69 264.2 164 73.2
Phvul.010G073500 Phaseolus vulgaris HOM05D006801 ORTHO05D008490 1.5e-68 263.1 162 75.3
AUR62030503 Chenopodium quinoa HOM05D006801 ORTHO05D008490 2.5e-68 262.3 166 71.7
Sp6g40620 Schrenkiella parvula HOM05D006801 ORTHO05D008490 2.5e-68 262.3 162 72.2
AL6G10870 Arabidopsis lyrata HOM05D006801 ORTHO05D008490 3.3e-68 261.9 162 72.8
PSO170G1048 Papaver somniferum HOM05D006801 ORTHO05D008490 5.6e-68 261.2 165 73.9
ECA247G3879 Erigeron canadensis HOM05D006801 ORTHO05D008490 1.2e-67 260.0 165 72.1
BraA10t45402Z Brassica rapa HOM05D006801 ORTHO05D008490 2.8e-67 258.8 162 71.6
CARHR211660 Cardamine hirsuta HOM05D006801 ORTHO05D008490 4.7e-67 258.1 158 73.4
VMungo0331G1898 Vigna mungo HOM05D006801 ORTHO05D008490 6.2e-67 257.7 166 72.9
Glyma.01G123100 Glycine max HOM05D006801 ORTHO05D008490 1.1e-66 256.9 166 71.7
BcaC06g31972 Brassica carinata HOM05D006801 ORTHO05D008490 1.4e-66 256.5 162 71.0
Migut.J00126 Erythranthe guttata HOM05D006801 ORTHO05D008490 1.4e-66 256.5 164 70.7
AT5G01300 Arabidopsis thaliana HOM05D006801 ORTHO05D008490 1.8e-66 256.1 162 69.8
SalBow5G2624 Salvia bowleyana HOM05D006801 ORTHO05D008490 6.8e-66 254.2 163 69.9
SalBow5G4248 Salvia bowleyana HOM05D006801 ORTHO05D008490 8.9e-66 253.8 163 69.9
Sopen09g001050 Solanum pennellii HOM05D006801 ORTHO05D008490 1.2e-65 253.4 165 73.3
EL10Ac5g12521 Beta vulgaris HOM05D006801 ORTHO05D008490 1.5e-65 253.1 166 68.7
Solyc09g005060.3 Solanum lycopersicum HOM05D006801 ORTHO05D008490 1.5e-65 253.1 165 73.3
Glyma.03G052200 Glycine max HOM05D006801 ORTHO05D008490 5.8e-65 251.1 166 69.9
CSS0028234 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 3.7e-64 248.4 166 70.5
Ah.12g058900 Amaranthus hybridus HOM05D006801 ORTHO05D008490 4.9e-64 248.1 165 70.9
PSO729G0120 Papaver somniferum HOM05D006801 ORTHO05D008490 2.4e-63 245.7 169 72.8
Os05g0468800 Oryza sativa ssp. japonica HOM05D006801 ORTHO05D008490 4.1e-63 245.0 165 68.5
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 2.7e-62 242.3 163 68.7
PSO729G0014 Papaver somniferum HOM05D006801 ORTHO05D008490 6.0e-62 241.1 165 70.9
PSO724G0025 Papaver somniferum HOM05D006801 ORTHO05D008490 1.0e-61 240.4 165 70.3
Lalb_Chr07g0191271 Lupinus albus HOM05D006801 ORTHO05D008490 4.3e-60 235.0 141 74.5
unitig_26.g9083 Utricularia gibba HOM05D006801 ORTHO05D008490 9.6e-60 233.8 156 69.9
FAN09G2180 Fragaria x ananassa HOM05D006801 ORTHO05D008490 3.6e-59 231.9 142 73.9
C09p74590 Brassica napus HOM05D005640 ORTHO05D007124 1.8e-58 229.6 138 72.5
A10p33680 Brassica napus HOM05D005640 ORTHO05D007124 1.5e-57 226.5 138 71.7
Thhalv10014869m.g Eutrema salsugineum HOM05D006801 ORTHO05D008490 9.9e-57 223.8 163 65.0
Medtr4g017680 Medicago truncatula HOM05D006801 ORTHO05D008490 8.4e-56 220.7 165 65.5
Sed0001867 Sechium edule HOM05D006801 ORTHO05D008490 1.1e-55 220.3 166 65.1
MBI15_g30116_MAGBIO Magnolia biondii HOM05D006801 ORTHO05D008490 4.2e-55 218.4 140 71.4
Nitab4.5_0000539g0120 Nicotiana tabacum HOM05D006801 ORTHO05D008490 3.5e-54 215.3 121 78.5
Lalb_Chr12g0207091 Lupinus albus HOM05D006801 ORTHO05D008490 1.3e-53 213.4 166 62.7
Zm00001eb351790 Zea mays HOM05D006801 ORTHO05D008490 1.1e-52 210.3 163 62.6
Dinv18520 Davidia involucrata HOM05D006801 ORTHO05D008490 1.9e-52 209.5 129 79.1
VMungo0331G1841 Vigna mungo HOM05D006801 ORTHO05D008490 9.6e-52 207.2 165 63.0
HPP92_026978 Vanilla planifolia HOM05D006801 ORTHO05D008490 2.1e-51 206.1 164 61.0
SEGI_01937 Sequoiadendron giganteum HOM05D006801 ORTHO05D008490 3.6e-51 205.3 158 57.0
Gohir.D01G218200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 5.3e-50 201.4 118 76.3
Lj3g0026162 Lotus japonicus HOM05D006801 ORTHO05D008490 9.0e-50 200.7 169 59.8
HPP92_015418 Vanilla planifolia HOM05D006801 ORTHO05D008490 1.5e-49 199.9 164 59.1
CSS0011838 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 4.9e-48 194.9 169 58.6
Mapoly0003s0041 Marchantia polymorpha HOM05D006801 ORTHO05D008490 4.9e-48 194.9 163 55.8
arahy.Tifrunner.gnm1.ann1.M4T34S Arachis hypogaea HOM05D006801 ORTHO05D008490 5.1e-45 184.9 174 55.2
SMO347G0428 Selaginella moellendorffii HOM05D006801 ORTHO05D008490 1.6e-43 179.9 163 54.0
CBR_g39562 Chara braunii HOM05D006801 ORTHO05D008490 5.3e-42 174.9 163 49.7
CDE08G0176 Ceratophyllum demersum HOM05D006801 ORTHO05D008490 1.2e-41 173.7 156 56.4
Pp3c1_41520 Physcomitrium patens HOM05D006801 ORTHO05D008490 1.5e-41 173.3 169 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3494 Anthoceros agrestis HOM05D006801 ORTHO05D008490 6.7e-37 157.9 143 54.5
Pp3c21_8040 Physcomitrium patens HOM05D006801 ORTHO05D008490 2.4e-34 149.4 156 49.4
Ca_20197_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 6.5e-32 141.4 165 46.1
PGSC0003DMG400006267 Solanum tuberosum HOM05D006801 ORTHO05D008490 6.5e-32 141.4 84 79.8
ATR0681G271 Amborella trichopoda HOM05D006801 ORTHO05D008490 3.2e-31 139.0 89 74.2
arahy.Tifrunner.gnm1.ann1.1WC97K Arachis hypogaea HOM05D006801 ORTHO05D008490 7.1e-31 137.9 130 54.6
Hma1.2p1_0501F.1_g167640 Hydrangea macrophylla HOM05D006801 ORTHO05D008490 6.0e-30 134.8 106 63.2
Prupe.1G005200 Prunus persica HOM05D006801 ORTHO05D008490 4.6e-22 108.6 152 42.8
ATR0681G235 Amborella trichopoda HOM05D006801 ORTHO05D008490 1.1e-18 97.4 51 80.4
Actinidia20750 Actinidia chinensis HOM05D006801 ORTHO05D008490 1.8e-13 80.1 119 42.0
FAN05G3081 Fragaria x ananassa HOM05D000734 ORTHO05D002223 5.7e-12 75.1 44 75.0


User provided reference genes

Program Settings