Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 4.7e-160 567.8 277 100.0
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.3e-82 309.7 206 77.2
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 2.3e-82 309.7 206 77.2
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 8.7e-74 281.2 206 72.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 8.7e-74 281.2 207 71.5
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.5e-73 279.6 205 70.7
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 7.4e-73 278.1 207 71.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.7e-72 275.8 202 67.8
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.8e-72 275.4 204 68.6
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 6.2e-72 275.0 204 69.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 8.1e-72 274.6 205 66.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 4.0e-71 272.3 208 66.8
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.3e-71 271.9 205 69.8
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.0e-69 267.7 206 67.5
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.0e-69 267.7 202 65.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-69 267.3 206 68.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.3e-69 267.3 206 66.5
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.3e-69 267.3 224 66.1
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.7e-69 266.9 212 65.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.9e-69 266.2 204 66.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.8e-69 265.8 206 68.0
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.8e-69 265.8 203 68.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.9e-69 265.4 210 65.7
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 8.4e-69 264.6 204 65.7
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.4e-68 263.8 204 66.2
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.2e-68 262.7 202 64.4
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 5.5e-68 261.9 205 66.3
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 9.3e-68 261.2 205 62.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.2e-67 260.8 214 65.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.7e-67 259.6 209 65.6
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 7.9e-67 258.1 206 64.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.0e-66 257.7 213 62.9
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.8e-66 256.9 202 65.3
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.8e-66 256.9 202 64.9
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 8.7e-66 254.6 203 64.5
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.1e-65 254.2 202 64.9
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.5e-65 253.8 204 64.7
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.9e-65 253.4 207 63.8
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 3.3e-65 252.7 210 62.4
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 3.3e-65 252.7 210 62.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.3e-65 252.7 205 64.4
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 5.7e-65 251.9 202 63.4
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.6e-64 250.4 203 64.5
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.1e-64 250.0 207 61.8
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.1e-64 250.0 209 61.7
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 2.1e-64 250.0 202 63.4
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 3.7e-64 249.2 204 61.8
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.7e-64 249.2 208 61.1
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.8e-64 248.8 226 59.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 6.3e-64 248.4 206 62.1
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 8.2e-64 248.1 210 61.4
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.1e-63 247.7 202 63.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.4e-63 247.3 220 61.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.4e-63 247.3 203 60.6
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.4e-63 246.5 208 63.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 4.1e-63 245.7 208 60.6
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.1e-63 245.7 202 62.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.3e-63 245.4 207 61.8
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 5.3e-63 245.4 209 61.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.0e-63 244.6 203 61.6
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.2e-62 244.2 204 62.7
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.2e-62 244.2 208 61.1
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.5e-62 243.8 158 74.1
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.5e-62 243.8 210 61.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.0e-62 243.4 211 61.6
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.0e-62 243.4 196 62.8
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.6e-62 243.0 207 60.4
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 7.6e-62 241.5 202 61.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.0e-61 241.1 209 60.8
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.2e-61 240.0 202 59.9
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.2e-61 240.0 202 62.9
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.2e-61 240.0 202 59.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.2e-61 240.0 204 63.2
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.9e-61 239.6 202 62.9
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.9e-61 239.6 203 61.6
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.9e-61 239.6 202 59.4
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.8e-61 239.2 208 60.6
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.0e-61 238.8 202 62.9
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.1e-60 237.7 208 60.6
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.1e-60 237.7 203 61.1
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.4e-60 237.3 207 62.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.9e-60 236.9 202 59.9
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.5e-60 236.5 203 60.1
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 7.2e-60 235.0 203 60.1
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 7.2e-60 235.0 212 59.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 7.2e-60 235.0 202 59.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 7.2e-60 235.0 205 61.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 9.3e-60 234.6 202 58.9
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 9.3e-60 234.6 202 58.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 9.3e-60 234.6 203 62.6
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.3e-60 234.6 202 58.4
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.6e-59 233.8 202 58.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 3.6e-59 232.6 206 60.2
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.6e-59 232.3 213 58.2
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.6e-59 232.3 213 58.2
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.6e-59 232.3 213 58.2
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.3e-58 230.7 202 61.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.8e-58 230.3 200 59.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-58 229.9 213 56.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.3e-58 229.9 206 57.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.0e-58 229.6 208 57.7
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.9e-58 229.2 203 62.6
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 6.7e-58 228.4 202 59.4
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 8.7e-58 228.0 222 54.5
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 4.3e-57 225.7 227 53.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 9.7e-57 224.6 204 59.8
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.3e-56 224.2 219 55.7
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.6e-56 223.8 206 57.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.8e-56 223.0 202 55.4
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.8e-56 223.0 208 56.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.8e-56 222.2 225 54.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 6.3e-56 221.9 133 78.2
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.3e-56 221.9 213 56.3
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.1e-55 221.1 212 59.4
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.1e-55 221.1 206 57.8
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-55 220.7 202 55.9
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.8e-55 220.3 202 54.5
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.8e-55 220.3 210 55.2
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.4e-55 219.9 234 50.9
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 5.3e-55 218.8 218 56.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 9.0e-55 218.0 153 68.6
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 9.0e-55 218.0 205 54.6
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.6e-54 216.5 232 50.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.6e-54 216.5 210 52.9
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.7e-54 214.9 201 55.2
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.7e-53 213.8 203 56.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.2e-53 213.4 245 46.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.2e-52 209.5 173 59.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.6e-51 207.2 203 53.2
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 6.7e-50 201.8 230 49.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 6.7e-50 201.8 222 51.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.3e-49 199.1 179 58.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 4.8e-48 195.7 111 82.9
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 6.1e-43 178.7 112 76.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.4e-42 177.6 106 78.3
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.2e-42 175.6 162 59.9
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.0e-41 173.7 206 52.4
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-41 172.2 245 43.7
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.8e-40 169.1 113 73.5
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.1e-39 167.9 108 71.3
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.6e-38 163.3 106 73.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.0e-37 161.4 152 53.3
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.2e-35 154.5 103 71.8
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.7e-35 153.3 103 74.8
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 6.7e-34 148.7 115 60.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.8e-34 148.3 106 65.1
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.2e-28 129.8 143 51.7
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 4.0e-26 122.9 114 57.9
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.0e-25 120.6 112 59.8
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.4e-23 113.6 63 82.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.9e-21 106.7 64 76.6
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.8e-19 100.1 79 62.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.8e-18 97.4 107 52.3
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 8.8e-18 95.1 63 74.6
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 2.2e-16 90.5 209 30.1
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.1e-15 88.2 112 36.6
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.6e-13 79.0 80 52.5
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.9e-12 77.4 117 35.9
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.4e-10 71.2 111 32.4
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 3.0e-10 70.1 110 40.0
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.0e-10 69.7 103 42.7
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 5.2e-10 69.3 92 45.7
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 6.8e-10 68.9 98 45.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.6e-09 67.0 100 41.0
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.7e-09 65.9 165 30.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 9.8e-09 65.1 106 29.2
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.8e-07 60.8 56 53.6


User provided reference genes

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