Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 1.2e-149 533.1 259 100.0
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 1.1e-115 420.2 258 79.8
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 2.6e-112 409.1 245 80.8
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 1.3e-111 406.8 245 78.8
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 1.7e-111 406.4 255 78.0
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 2.9e-111 405.6 248 79.4
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 6.4e-111 404.4 254 76.4
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 8.3e-111 404.1 245 78.8
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 3.2e-110 402.1 246 78.5
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 3.2e-110 402.1 245 77.6
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 5.4e-110 401.4 245 79.2
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 1.2e-109 400.2 255 75.7
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 1.2e-109 400.2 245 78.8
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.1e-109 399.4 244 78.3
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 2.1e-109 399.4 253 76.3
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 6.0e-109 397.9 262 73.7
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 6.2e-106 387.9 246 75.6
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 1.8e-105 386.3 252 74.6
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.8e-105 386.3 237 78.1
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 3.1e-105 385.6 224 80.8
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 5.2e-105 384.8 245 75.5
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 6.8e-105 384.4 280 67.9
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 3.4e-104 382.1 248 74.6
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 4.4e-104 381.7 252 73.4
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 3.7e-103 378.6 244 76.6
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 4.9e-103 378.3 246 75.2
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 6.4e-103 377.9 251 72.1
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 8.3e-103 377.5 244 75.4
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 8.3e-103 377.5 245 74.7
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 3.2e-102 375.6 252 70.6
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 5.4e-102 374.8 251 71.3
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 7.1e-102 374.4 243 73.3
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 1.2e-101 373.6 243 73.3
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 1.2e-101 373.6 242 74.4
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 1.2e-101 373.6 242 75.2
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 3.5e-101 372.1 263 70.0
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 3.5e-101 372.1 244 73.8
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 4.6e-101 371.7 245 74.7
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 6.0e-101 371.3 243 72.0
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 1.3e-100 370.2 243 72.8
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 1.7e-100 369.8 251 70.5
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 2.3e-100 369.4 243 73.7
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 2.3e-100 369.4 258 69.0
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 2.3e-100 369.4 245 73.5
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 8.6e-100 367.5 244 73.0
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.1e-99 367.1 304 62.2
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 1.9e-99 366.3 252 70.6
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 1.9e-99 366.3 242 73.1
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 1.2e-98 363.6 259 70.3
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 1.6e-98 363.2 242 74.0
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 1.6e-98 363.2 243 73.7
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.6e-98 363.2 241 73.4
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 2.1e-98 362.8 244 71.7
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 2.1e-98 362.8 243 71.6
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.1e-98 362.8 253 70.8
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 4.7e-98 361.7 244 72.1
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 4.7e-98 361.7 241 72.6
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 3.1e-97 359.0 243 72.4
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 5.2e-97 358.2 243 71.2
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 5.2e-97 358.2 243 72.4
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 7.6e-96 354.4 243 70.4
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 1.3e-95 353.6 244 71.7
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 1.3e-95 353.6 205 82.0
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.3e-95 353.6 255 69.8
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 2.9e-95 352.4 243 70.0
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.9e-95 352.4 244 70.9
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 6.4e-95 351.3 245 71.4
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 8.4e-95 350.9 243 71.2
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 1.1e-94 350.5 245 70.2
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 7.1e-94 347.8 261 64.8
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 9.2e-94 347.4 246 67.5
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 4.6e-93 345.1 244 68.0
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 6.6e-92 341.3 248 69.8
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 2.8e-90 335.9 245 67.8
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 2.0e-88 329.7 233 67.0
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 3.2e-86 322.4 300 57.0
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 2.1e-85 319.7 266 63.9
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 7.8e-85 317.8 248 62.9
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 7.8e-85 317.8 195 76.9
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 1.3e-84 317.0 242 64.0
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 6.2e-82 308.1 253 64.8
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 1.2e-80 303.9 183 79.8
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 3.8e-79 298.9 279 54.8
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 4.9e-79 298.5 253 59.7
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 3.2e-78 295.8 243 62.6
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 4.6e-77 292.0 248 62.9
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 1.8e-76 290.0 193 72.0
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 6.7e-76 288.1 175 77.1
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 6.7e-76 288.1 262 55.3
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 2.0e-72 276.6 274 52.2
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 2.6e-72 276.2 178 75.3
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 1.7e-71 273.5 269 53.9
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 1.1e-67 260.8 210 60.5
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 4.3e-67 258.8 290 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 6.9e-65 251.5 212 58.0
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 9.3e-62 241.1 252 51.2
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 6.0e-61 238.4 283 44.9
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 6.1e-53 211.8 134 74.6
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 2.5e-51 206.5 136 74.3
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 1.0e-47 194.5 116 77.6
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 5.0e-47 192.2 183 55.7
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 5.2e-28 129.0 88 68.2
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 6.8e-28 128.6 85 72.9
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 4.1e-25 119.4 93 65.6
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 2.6e-11 73.6 36 86.1
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 1.4e-09 67.8 266 25.9
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 4.1e-09 66.2 263 28.1
vmacro17831 Vaccinium macrocarpon HOM05D005677 ORTHO05D006966 2.0e-08 63.9 252 27.4
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 3.5e-08 63.2 273 27.1
MELO3C007826.2 Cucumis melo HOM05D005677 ORTHO05D006966 3.5e-08 63.2 269 28.3
Haze_15089 Corylus avellana HOM05D005677 ORTHO05D006966 4.5e-08 62.8 256 27.3
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 5.9e-08 62.4 247 25.9
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 5.9e-08 62.4 247 25.9
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 7.8e-08 62.0 247 25.9
Phvul.003G253400 Phaseolus vulgaris HOM05D005677 ORTHO05D006966 7.8e-08 62.0 235 26.8
CiPaw.01G038100 Carya illinoinensis HOM05D005677 ORTHO05D006966 1.0e-07 61.6 229 26.6
Cfa004307 Carpinus fangiana HOM05D005677 ORTHO05D006966 2.3e-07 60.5 230 27.8
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 2.9e-07 60.1 192 27.6
Sed0020674 Sechium edule HOM05D005677 ORTHO05D006966 2.9e-07 60.1 230 27.4
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 3.9e-07 59.7 139 27.3
CsaV3_6G046230 Cucumis sativus L. HOM05D005677 ORTHO05D006966 1.1e-06 58.2 259 27.0
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 1.5e-06 57.8 264 23.5
arahy.Tifrunner.gnm1.ann1.V4VRBH Arachis hypogaea HOM05D005677 ORTHO05D006966 1.5e-06 57.8 266 23.7
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 1.9e-06 57.4 182 28.0
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 1.9e-06 57.4 216 23.6
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 2.5e-06 57.0 131 29.8
Dinv39987 Davidia involucrata HOM05D005677 ORTHO05D006966 2.5e-06 57.0 205 26.8
Lsat_1_v5_gn_4_152101 Lactuca sativa HOM05D005677 ORTHO05D006966 2.5e-06 57.0 141 31.2
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 3.3e-06 56.6 216 24.1
ECA232G2278 Erigeron canadensis HOM05D005677 ORTHO05D006966 4.3e-06 56.2 130 30.0
Hma1.2p1_0224F.1_g094650 Hydrangea macrophylla HOM05D005677 ORTHO05D006966 4.3e-06 56.2 216 26.4
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 4.3e-06 56.2 144 28.5
HPP92_019510 Vanilla planifolia HOM05D005677 ORTHO05D006966 4.3e-06 56.2 256 25.8
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 5.6e-06 55.8 131 29.0
FAN28G0162 Fragaria x ananassa HOM05D005677 ORTHO05D006966 5.6e-06 55.8 245 24.9
Psat4g092640 Pisum sativum HOM05D005677 ORTHO05D006966 5.6e-06 55.8 190 25.3
Zm00001eb324730 Zea mays HOM05D005677 ORTHO05D006966 5.6e-06 55.8 164 29.3
COL.COLO4_22080 Corchorus olitorius HOM05D005677 ORTHO05D006966 7.3e-06 55.5 243 26.7
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 7.3e-06 55.5 198 27.3
Prupe.7G154600 Prunus persica HOM05D005677 ORTHO05D006966 7.3e-06 55.5 227 24.7
FAN23G0294 Fragaria x ananassa HOM05D005677 ORTHO05D006966 9.5e-06 55.1 162 28.4


User provided reference genes

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