Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 9.0e-246 853.2 448 100.0
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.3e-132 477.2 462 63.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.7e-127 460.3 462 61.9
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 8.4e-127 458.0 453 60.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 5.4e-126 455.3 459 62.3
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.3e-122 444.1 457 60.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.9e-121 438.3 455 62.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 4.9e-119 432.2 449 61.0
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.2e-118 429.1 454 58.1
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.3e-118 427.9 454 58.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.3e-116 424.1 453 58.3
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.1e-115 421.0 454 59.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.9e-115 420.2 453 58.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.1e-113 412.9 454 57.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 9.0e-113 411.4 424 60.6
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 7.1e-110 401.7 450 56.0
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 3.5e-109 399.4 453 57.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-108 397.5 456 56.1
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.3e-107 392.9 460 54.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.8e-105 387.1 455 54.1
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.2e-104 384.4 460 53.7
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.9e-104 382.1 448 54.9
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.5e-103 378.3 452 53.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.5e-102 376.7 435 55.6
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.0e-99 367.1 455 51.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.2e-96 357.8 453 52.1
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.5e-96 355.9 460 52.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.2e-93 347.8 451 51.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 6.7e-92 342.0 459 50.8
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.4e-89 333.6 459 50.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 5.3e-89 332.4 452 51.3
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.2e-85 321.2 455 49.5
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.7e-85 320.1 435 50.1
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 3.0e-84 316.6 458 50.9
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.0e-83 313.9 456 48.5
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 4.4e-83 312.8 450 48.9
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.3e-82 311.2 450 47.6
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.2e-82 310.5 441 47.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.1e-81 308.1 453 48.1
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.1e-81 308.1 441 46.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.1e-81 308.1 449 50.3
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.4e-81 307.0 451 45.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 2.0e-80 303.9 455 45.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 7.7e-80 302.0 453 45.3
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.0e-79 301.6 446 48.7
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.9e-79 300.1 462 44.8
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.8e-79 299.7 453 47.7
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 5.0e-79 299.3 457 48.6
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.0e-79 299.3 444 46.8
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.5e-78 297.7 461 46.2
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.5e-78 297.0 460 46.1
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 4.2e-78 296.2 449 48.8
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 5.5e-78 295.8 439 47.8
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 7.2e-78 295.4 458 46.9
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 9.4e-78 295.0 332 53.9
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-77 294.7 453 45.5
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.2e-77 294.7 454 45.8
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 3.6e-77 293.1 448 45.8
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.4e-76 291.2 446 44.8
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.3e-76 290.4 440 48.2
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 6.8e-76 288.9 463 45.1
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 6.8e-76 288.9 460 48.9
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.2e-75 288.1 468 45.3
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.5e-75 287.7 440 47.3
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 6.3e-74 282.3 443 46.0
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.4e-73 281.2 472 43.4
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.4e-73 281.2 482 44.6
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.3e-73 279.3 457 44.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.0e-73 278.9 474 42.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.0e-72 277.3 446 43.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.7e-72 276.9 456 43.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.5e-72 276.2 444 42.1
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 7.7e-72 275.4 457 42.9
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.5e-70 271.2 450 45.8
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.2e-70 270.0 462 42.4
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-70 269.2 462 45.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 7.2e-70 268.9 454 43.4
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.1e-69 267.3 456 41.9
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.0e-69 265.4 437 42.8
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.3e-68 263.8 461 42.7
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.0e-68 263.5 459 45.5
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 8.8e-68 261.9 454 41.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.0e-67 260.8 467 40.3
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.6e-67 260.4 439 44.9
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 7.5e-67 258.8 448 44.2
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-66 258.1 357 47.3
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.8e-66 256.9 445 41.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.8e-66 256.9 443 42.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 3.7e-66 256.5 427 43.8
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.8e-66 256.1 461 41.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.4e-65 254.6 459 42.5
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.0e-65 252.3 456 40.6
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-64 251.5 446 42.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.7e-64 250.4 439 45.8
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.7e-64 250.4 459 41.8
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 4.5e-64 249.6 450 42.7
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 5.9e-64 249.2 449 41.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.0e-63 248.4 472 40.5
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-63 247.7 443 40.9
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.7e-63 247.7 459 41.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-62 243.8 450 42.2
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.5e-62 242.7 451 41.5
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 4.7e-61 239.6 455 43.7
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 8.0e-61 238.8 440 41.6
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 2.6e-59 233.8 386 45.1
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.2e-58 230.7 450 41.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.2e-56 224.9 463 40.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 3.5e-56 223.4 459 42.3
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 4.5e-56 223.0 473 41.2
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.0e-55 221.9 476 40.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-55 221.5 436 38.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.7e-55 221.1 458 41.9
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.0e-55 219.5 498 38.2
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.5e-54 217.2 452 38.3
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 3.3e-54 216.9 440 38.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-53 214.9 439 39.0
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.1e-53 212.6 456 40.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 6.1e-53 212.6 446 37.7
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-52 210.3 446 38.3
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 7.8e-48 195.7 430 38.8
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.7e-47 194.5 400 41.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.0e-47 193.7 451 38.8
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.9e-46 191.0 433 36.0
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.5e-46 190.7 469 37.3
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 4.3e-46 189.9 420 36.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 5.6e-46 189.5 420 36.7
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 4.7e-45 186.4 420 36.4
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.2e-40 171.8 411 33.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 7.8e-40 169.1 391 37.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.9e-39 166.8 435 33.8
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.9e-39 166.8 453 34.2
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 6.6e-39 166.0 338 39.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.1e-38 165.2 139 66.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.3e-38 163.7 437 32.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.3e-38 162.5 452 32.3
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 3.6e-37 160.2 446 33.0
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 7.6e-35 152.5 367 34.9
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.7e-34 151.4 195 49.2
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.2e-34 151.0 372 35.5
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.1e-33 148.7 305 39.0
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.4e-33 148.3 292 40.1
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 9.2e-33 145.6 111 71.2
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.3e-31 141.0 455 33.0
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 5.1e-31 139.8 304 37.2
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.3e-30 136.7 125 60.0
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 5.6e-30 136.3 444 31.3
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 5.6e-30 136.3 142 54.9
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 9.6e-30 135.6 301 37.9
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-27 128.6 140 59.3
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.0e-23 115.5 105 61.0
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.1e-22 112.1 219 39.7
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.5e-22 111.7 481 28.3
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 6.4e-18 96.3 229 37.6
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.4e-18 95.9 106 45.3
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 3.2e-17 94.0 187 34.2
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 5.4e-17 93.2 153 43.1
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 9.3e-17 92.4 298 31.2
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.3e-15 88.6 422 28.9
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.5e-14 85.1 194 33.0
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-14 85.1 216 32.9
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.5e-14 85.1 192 37.5
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 3.3e-14 84.0 58 69.0
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 5.6e-14 83.2 120 40.8
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.3e-13 82.0 120 42.5
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.1e-13 81.3 113 41.6
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.6e-13 80.5 109 45.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 4.8e-13 80.1 212 31.6
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.2e-11 75.5 129 39.5
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 2.0e-11 74.7 72 48.6
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 7.6e-11 72.8 113 38.1
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.9e-11 72.4 389 26.7
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-09 68.6 45 68.9
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 4.2e-09 67.0 432 26.2
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 6.0e-08 63.2 68 50.0
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-06 58.9 82 45.1


User provided reference genes

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