Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 2.9e-71 271.9 154 100.0
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.8e-21 105.1 161 47.8
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.2e-21 104.8 143 49.7
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 6.2e-21 104.8 151 47.7
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 8.1e-21 104.4 180 47.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.1e-20 104.0 154 46.8
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.4e-20 103.6 143 49.0
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.8e-20 103.2 143 47.6
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 4.0e-20 102.1 154 43.5
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 4.0e-20 102.1 175 47.4
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.2e-19 100.5 171 43.3
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 2.0e-19 99.8 157 43.9
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 2.6e-19 99.4 163 46.6
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 2.6e-19 99.4 163 46.6
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 5.8e-19 98.2 122 50.8
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 9.9e-19 97.4 141 44.7
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.7e-18 96.7 175 44.6
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 4.9e-18 95.1 162 43.2
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.1e-17 94.0 136 49.3
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 5.4e-17 91.7 147 46.3
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.6e-16 90.1 147 45.6
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 1.6e-16 90.1 128 43.0
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.7e-16 89.4 155 43.2
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 3.5e-16 89.0 160 40.6
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 3.5e-16 89.0 159 42.8
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.5e-16 89.0 130 48.5
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 6.0e-16 88.2 138 48.6
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.3e-15 87.0 151 47.0
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.3e-15 87.0 151 47.0
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 1.7e-15 86.7 130 44.6
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 2.3e-15 86.3 141 43.3
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.9e-15 85.5 147 45.6
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.1e-14 84.0 145 40.0
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 1.1e-14 84.0 147 42.2
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.9e-14 83.2 145 40.0
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 5.6e-14 81.6 105 44.8
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 7.3e-14 81.3 130 43.8
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 9.6e-14 80.9 117 44.4
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 9.6e-14 80.9 146 41.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.6e-13 80.1 100 50.0
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 3.6e-13 79.0 104 48.1
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.8e-13 78.6 148 41.2
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 4.8e-13 78.6 104 47.1
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.6e-11 72.8 119 41.2
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 3.4e-11 72.4 121 39.7
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 3.4e-11 72.4 59 59.3
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 4.5e-11 72.0 120 41.7
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 7.6e-11 71.2 98 45.9
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 9.9e-11 70.9 41 80.5
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 1.3e-10 70.5 118 42.4
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 1.3e-10 70.5 134 36.6
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.7e-10 70.1 118 40.7
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 2.9e-10 69.3 86 54.7
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 6.4e-10 68.2 140 42.9
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 6.4e-10 68.2 101 44.6
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 8.4e-10 67.8 53 64.2
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 1.1e-09 67.4 101 42.6
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 1.1e-09 67.4 101 42.6
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.4e-09 67.0 116 39.7
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.9e-09 66.6 98 43.9
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 1.9e-09 66.6 57 57.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.4e-09 66.2 98 43.9
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.4e-09 66.2 118 44.1
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 3.2e-09 65.9 97 42.3
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 5.5e-09 65.1 99 40.4
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 7.1e-09 64.7 59 57.6
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 7.1e-09 64.7 116 37.1
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.2e-08 63.9 185 33.0
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 2.7e-08 62.8 97 43.3
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 2.7e-08 62.8 119 37.8
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 2.7e-08 62.8 98 40.8
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 4.6e-08 62.0 133 39.1
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.0e-07 60.8 146 37.7
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 1.8e-07 60.1 106 40.6
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.3e-07 59.7 41 68.3
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.3e-07 59.7 41 68.3
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.0e-07 59.3 59 54.2
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 3.9e-07 58.9 41 58.5
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 5.1e-07 58.5 126 36.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.1e-07 58.5 131 36.6
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 6.7e-07 58.2 147 33.3
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 6.7e-07 58.2 60 51.7
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 8.7e-07 57.8 62 51.6
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.1e-06 57.4 90 41.1
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-06 57.0 41 63.4
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-06 57.0 41 63.4
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.5e-06 57.0 39 64.1
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.5e-06 57.0 98 41.8
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.9e-06 56.6 61 52.5
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.9e-06 56.6 41 56.1
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 3.3e-06 55.8 130 39.2
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 3.3e-06 55.8 98 41.8
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 4.3e-06 55.5 33 75.8
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 4.3e-06 55.5 89 38.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.3e-06 55.5 64 51.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 4.3e-06 55.5 60 48.3
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 4.3e-06 55.5 67 44.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 5.6e-06 55.1 37 67.6
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.6e-06 55.1 39 56.4
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 5.6e-06 55.1 137 38.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 5.6e-06 55.1 33 75.8
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 5.6e-06 55.1 33 75.8
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 5.6e-06 55.1 95 41.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 7.4e-06 54.7 30 80.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.4e-06 54.7 37 67.6
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 7.4e-06 54.7 43 58.1
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 9.6e-06 54.3 69 44.9
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 9.6e-06 54.3 37 62.2
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.6e-06 54.3 186 29.0
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 9.6e-06 54.3 56 53.6


User provided reference genes

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