Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 9.9e-59 229.9 119 100.0
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.8e-36 156.0 113 69.9
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.4e-35 151.8 119 64.7
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.0e-34 150.2 117 63.2
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.2e-34 149.1 118 65.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.2e-34 149.1 119 64.7
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.5e-33 145.6 120 64.2
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.5e-33 145.6 120 65.8
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 9.3e-33 143.7 118 61.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 9.3e-33 143.7 113 65.5
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.2e-32 143.3 118 63.6
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.2e-32 143.3 112 65.2
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.6e-32 142.9 119 63.0
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 2.1e-32 142.5 117 61.5
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.1e-32 142.5 107 67.3
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.5e-32 141.7 122 63.1
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.3e-31 139.8 120 65.0
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-31 139.4 122 62.3
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-31 139.0 118 61.9
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 2.3e-31 139.0 113 61.9
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.3e-31 139.0 118 61.0
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.3e-31 139.0 118 61.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 2.3e-31 139.0 116 63.8
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.3e-31 139.0 118 61.0
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.0e-31 138.7 120 65.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 3.0e-31 138.7 121 63.6
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 5.1e-31 137.9 123 60.2
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.1e-31 137.9 118 60.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.1e-31 137.9 120 64.2
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.1e-31 137.9 120 64.2
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 5.1e-31 137.9 112 63.4
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 8.7e-31 137.1 118 61.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 8.7e-31 137.1 119 62.2
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.7e-31 137.1 120 64.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.1e-30 136.7 121 62.8
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.1e-30 136.7 118 60.2
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.5e-30 136.3 113 65.5
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.5e-30 136.3 117 59.8
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.5e-30 136.3 117 59.8
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 2.5e-30 135.6 119 60.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.5e-30 135.6 120 63.3
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.5e-30 135.6 119 58.0
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.3e-30 135.2 120 65.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 4.3e-30 134.8 120 60.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.6e-29 132.9 117 59.8
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.6e-29 132.9 121 60.3
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.6e-29 132.9 114 64.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 3.7e-29 131.7 120 59.2
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 3.7e-29 131.7 119 58.0
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 4.8e-29 131.3 119 60.5
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 4.8e-29 131.3 113 62.8
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.8e-29 131.3 114 64.9
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.1e-28 130.2 123 61.8
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.1e-28 130.2 111 62.2
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.1e-28 130.2 119 62.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.1e-28 130.2 120 59.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.4e-28 129.8 121 59.5
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 3.1e-28 128.6 122 58.2
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 3.1e-28 128.6 122 55.7
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 3.1e-28 128.6 118 59.3
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.1e-28 128.6 113 61.1
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 5.3e-28 127.9 80 73.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.9e-28 127.5 82 76.8
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 6.9e-28 127.5 93 65.6
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 6.9e-28 127.5 79 74.7
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 6.9e-28 127.5 79 74.7
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 6.9e-28 127.5 80 76.2
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 9.0e-28 127.1 119 60.5
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 9.0e-28 127.1 118 57.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 9.0e-28 127.1 122 56.6
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.2e-27 126.7 127 55.9
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.2e-27 126.7 76 78.9
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.0e-27 125.9 138 52.2
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 113 60.2
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.0e-27 125.9 79 77.2
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.6e-27 125.6 119 59.7
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.6e-27 125.6 76 77.6
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 4.5e-27 124.8 113 61.9
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 4.5e-27 124.8 117 59.0
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 4.5e-27 124.8 117 59.0
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 4.5e-27 124.8 117 59.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.8e-27 124.4 118 59.3
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 7.6e-27 124.0 113 61.9
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 7.6e-27 124.0 113 60.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.0e-26 123.6 117 54.7
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.0e-26 123.6 93 65.6
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-26 123.2 115 57.4
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.3e-26 123.2 79 74.7
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.7e-26 122.9 119 59.7
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.7e-26 122.9 80 71.2
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.2e-26 122.5 87 71.3
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.9e-26 122.1 119 57.1
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 2.9e-26 122.1 81 74.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.9e-26 122.1 75 77.3
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 3.8e-26 121.7 76 75.0
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 5.0e-26 121.3 119 55.5
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 5.0e-26 121.3 119 55.5
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 6.5e-26 120.9 124 58.9
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 8.4e-26 120.6 73 79.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.1e-25 120.2 114 57.0
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 1.1e-25 120.2 97 62.9
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.1e-25 120.2 120 56.7
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.9e-25 119.4 113 57.5
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 2.5e-25 119.0 82 69.5
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 2.5e-25 119.0 82 69.5
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 2.5e-25 119.0 82 69.5
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.5e-25 119.0 152 50.7
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 2.5e-25 119.0 113 61.1
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 4.2e-25 118.2 86 68.6
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.2e-25 118.2 70 77.1
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.2e-25 117.5 119 58.8
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.2e-24 116.7 116 56.0
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.7e-24 115.5 113 55.8
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 6.1e-24 114.4 65 83.1
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.1e-24 114.4 66 84.8
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.0e-23 113.6 103 55.3
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.9e-23 111.7 64 81.2
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 6.7e-23 110.9 119 52.1
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.1e-22 110.2 97 57.7
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.5e-22 109.8 76 68.4
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.9e-20 100.9 110 51.8
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 9.0e-20 100.5 73 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 2.6e-19 99.0 75 64.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 3.4e-19 98.6 59 76.3
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.7e-19 97.4 94 56.4
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.9e-18 95.5 51 86.3
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 4.2e-17 91.7 71 60.6
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 4.2e-17 91.7 85 54.1
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.5e-17 91.3 97 54.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.6e-16 89.7 83 56.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.1e-16 89.4 56 73.2
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 8.8e-15 84.0 95 50.5
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 8.8e-15 84.0 79 59.5
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.8e-12 76.3 139 38.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 5.3e-12 74.7 47 68.1
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.0e-11 72.8 67 55.2
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 8.8e-07 57.4 92 40.2


User provided reference genes

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