Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 2.4e-133 478.8 238 100.0
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 1.2e-63 247.3 157 82.2
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 2.1e-60 236.5 242 55.8
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 9.8e-58 227.6 242 56.2
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 2.0e-55 219.9 238 52.9
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 1.7e-54 216.9 238 52.1
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 6.6e-54 214.9 237 52.3
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 2.9e-49 199.5 240 48.3
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 8.3e-49 198.0 241 48.5
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 3.3e-45 186.0 238 45.0
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 1.2e-44 184.1 235 46.8
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 1.6e-44 183.7 238 50.4
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 1.1e-43 181.0 237 48.1
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 9.9e-42 174.5 238 46.2
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 1.3e-41 174.1 238 46.2
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 2.9e-41 172.9 239 43.5
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 2.9e-41 172.9 237 46.4
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 3.7e-41 172.6 239 48.1
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.9e-41 172.2 237 46.4
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 6.4e-41 171.8 237 42.2
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 8.3e-41 171.4 243 44.9
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 2.4e-40 169.9 237 45.6
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.1e-40 169.1 236 46.2
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 9.2e-40 167.9 237 45.1
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 9.2e-40 167.9 238 43.7
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 1.2e-39 167.5 244 45.1
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 1.6e-39 167.2 242 43.8
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 2.1e-39 166.8 245 44.5
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 6.0e-39 165.2 241 47.3
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 2.3e-38 163.3 242 41.7
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 1.9e-37 160.2 237 40.9
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 5.6e-37 158.7 239 43.9
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 7.3e-37 158.3 237 43.9
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 2.1e-36 156.8 238 45.8
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 2.1e-36 156.8 244 42.6
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 3.6e-36 156.0 240 45.0
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 8.1e-36 154.8 246 41.5
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 8.1e-36 154.8 246 41.5
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 1.1e-35 154.5 236 46.2
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.1e-35 154.5 239 41.4
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 1.1e-35 154.5 236 43.6
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 5.2e-35 152.1 237 41.8
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 6.8e-35 151.8 244 39.8
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 5.8e-34 148.7 239 42.7
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.7e-33 147.1 238 44.1
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.7e-33 147.1 238 44.1
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 3.8e-33 146.0 241 42.7
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 8.4e-33 144.8 233 42.5
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 8.4e-33 144.8 232 40.9
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 2.1e-31 140.2 242 43.0
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 3.5e-31 139.4 241 41.1
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 7.8e-31 138.3 238 38.2
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 1.3e-30 137.5 241 40.2
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 1.7e-30 137.1 233 41.6
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 1.9e-29 133.7 243 38.7
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 2.5e-29 133.3 233 39.5
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 9.6e-29 131.3 254 38.2
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 2.1e-28 130.2 238 39.9
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 2.8e-28 129.8 240 40.4
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 3.6e-28 129.4 238 39.9
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 4.7e-28 129.0 238 39.9
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 3.1e-27 126.3 237 38.8
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 5.3e-27 125.6 211 35.5
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 2.0e-26 123.6 208 43.8
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 2.6e-26 123.2 245 39.6
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 9.9e-26 121.3 211 40.3
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 1.3e-25 120.9 236 35.2
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 1.6e-23 114.0 251 37.5
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 1.6e-23 114.0 236 36.4
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 1.7e-22 110.5 245 38.0
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 3.9e-22 109.4 234 34.6
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 5.1e-22 109.0 245 34.7
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 5.6e-21 105.5 232 34.9
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 5.6e-21 105.5 236 36.0
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 1.3e-20 104.4 213 38.5
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 2.8e-20 103.2 235 34.9
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 8.1e-20 101.7 236 33.9
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 1.1e-16 91.3 236 32.6
Sc22g0004450 Simmondsia chinensis HOM05D007762 ORTHO05D008066 9.3e-16 88.2 244 32.0
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 4.6e-15 85.9 248 31.9
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 6.0e-15 85.5 211 29.9
AUR62032040 Chenopodium quinoa HOM05D021339 ORTHO05D008066 1.8e-14 84.0 241 32.0
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 2.3e-14 83.6 242 33.5
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 3.0e-14 83.2 241 32.0
EL10As1g23088 Beta vulgaris HOM05D021339 ORTHO05D008066 1.1e-13 81.3 238 34.0
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.5e-13 80.9 91 50.5
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 2.5e-13 80.1 242 32.6
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 1.3e-12 77.8 238 31.9
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 1.6e-12 77.4 91 47.3
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 2.1e-12 77.0 90 46.7
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 2.8e-12 76.6 94 46.8
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 2.8e-12 76.6 90 45.6
AUR62042387 Chenopodium quinoa HOM05D021339 ORTHO05D008066 2.8e-12 76.6 247 31.6
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 8.1e-12 75.1 167 35.9
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 1.4e-11 74.3 177 33.9
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 1.8e-11 73.9 177 33.9
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 2.4e-11 73.6 95 45.3
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 4.0e-11 72.8 172 33.1
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 4.0e-11 72.8 88 47.7
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 5.3e-11 72.4 174 33.9
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 6.9e-11 72.0 239 30.1
AUR62032712 Chenopodium quinoa HOM05D021339 ORTHO05D008066 6.9e-11 72.0 241 30.3
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 6.9e-11 72.0 123 42.3
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.2e-10 71.2 174 33.9
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 1.5e-10 70.9 176 34.1
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.5e-10 70.9 176 34.1
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 3.4e-10 69.7 141 36.9
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 4.5e-10 69.3 173 34.1
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 5.8e-10 68.9 239 31.0
HanXRQChr01g0001221 Helianthus annuus HOM05D007762 ORTHO05D008066 7.6e-10 68.6 56 64.3
Thhalv10015459m.g Eutrema salsugineum HOM05D012592 ORTHO05D008066 3.8e-09 66.2 241 30.3
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 2.5e-08 63.5 164 32.3
CDE02G1216 Ceratophyllum demersum HOM05D007762 ORTHO05D008066 9.3e-08 61.6 56 53.6
SGA_v2.0_scaffold75G24961 Striga asiatica HOM05D007762 ORTHO05D008066 9.3e-08 61.6 236 25.4
THA.LOC104827023 Tarenaya hassleriana HOM05D012592 ORTHO05D008066 1.2e-07 61.2 247 28.7
CARHR211150 Cardamine hirsuta HOM05D012592 ORTHO05D008066 6.0e-07 58.9 88 42.0
CsaV3_4G025130 Cucumis sativus L. HOM05D041730 ORTHO05D034779 2.3e-06 57.0 90 38.9
A10p33410 Brassica napus HOM05D012592 ORTHO05D008066 3.9e-06 56.2 149 32.9
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 3.9e-06 56.2 149 32.9
MELO3C003141.2 Cucumis melo HOM05D041730 ORTHO05D034779 5.1e-06 55.8 112 34.8
ClCG04G008070 Citrullus lanatus HOM05D041730 ORTHO05D034779 6.7e-06 55.5 112 34.8


User provided reference genes

Program Settings