Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 2.6e-92 342.0 173 100.0
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 4.7e-33 145.2 178 50.0
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 2.2e-30 136.3 170 47.6
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 1.3e-27 127.1 174 46.0
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 6.5e-27 124.8 176 46.0
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.6e-25 119.0 94 62.8
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 3.6e-25 119.0 158 47.5
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 1.4e-24 117.1 177 42.9
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 1.8e-24 116.7 168 45.2
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.3e-23 112.5 94 58.5
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 1.3e-22 110.5 181 39.8
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 4.1e-21 105.5 167 41.3
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 9.1e-21 104.4 173 43.9
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 1.6e-20 103.6 179 41.9
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 3.5e-20 102.4 190 37.9
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 1.7e-19 100.1 165 45.5
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 2.2e-19 99.8 165 39.4
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.9e-19 99.4 79 62.0
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 2.9e-19 99.4 172 41.9
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 5.0e-19 98.6 158 39.2
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 8.5e-19 97.8 176 41.5
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 1.9e-18 96.7 150 41.3
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 1.9e-18 96.7 162 43.2
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 3.2e-18 95.9 165 41.8
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 4.2e-18 95.5 162 42.0
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 1.2e-17 94.0 180 38.3
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.6e-17 93.6 178 38.2
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.1e-17 93.2 165 43.0
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.1e-17 93.2 165 43.0
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 8.0e-17 91.3 163 41.7
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.0e-16 90.9 170 35.9
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-16 90.9 167 40.1
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.8e-16 90.1 159 40.3
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 4.0e-16 89.0 167 38.3
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 8.8e-16 87.8 167 37.7
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.5e-15 87.0 110 48.2
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 3.4e-15 85.9 160 36.9
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.4e-15 85.9 179 35.8
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 3.4e-15 85.9 90 50.0
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.4e-15 85.5 92 53.3
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 4.4e-15 85.5 109 45.9
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 4.4e-15 85.5 151 37.1
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 4.4e-15 85.5 164 39.6
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 5.7e-15 85.1 144 45.8
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 5.7e-15 85.1 182 35.2
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 9.8e-15 84.3 151 40.4
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.3e-14 84.0 176 37.5
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.7e-14 83.6 153 40.5
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 3.7e-14 82.4 192 33.3
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 3.7e-14 82.4 152 39.5
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 3.7e-14 82.4 112 47.3
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 6.3e-14 81.6 172 39.0
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 8.3e-14 81.3 80 57.5
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 1.1e-13 80.9 104 44.2
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 1.1e-13 80.9 168 38.7
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.8e-13 80.1 86 51.2
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 2.4e-13 79.7 175 34.3
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 3.1e-13 79.3 80 48.8
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 4.1e-13 79.0 118 45.8
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 7.0e-13 78.2 156 35.9
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 9.1e-13 77.8 83 51.8
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 2.0e-12 76.6 100 43.0
ClCG04G008210 Citrullus lanatus HOM05D023073 ORTHO05D005174 2.7e-12 76.3 83 47.0
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 3.5e-12 75.9 77 54.5
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 3.5e-12 75.9 141 38.3
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 5.9e-12 75.1 113 45.1
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 5.9e-12 75.1 113 45.1
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 5.9e-12 75.1 113 45.1
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 7.7e-12 74.7 73 54.8
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 7.7e-12 74.7 87 54.0
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 3.8e-11 72.4 80 56.2
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 3.8e-11 72.4 168 33.9
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 5.0e-11 72.0 84 50.0
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 8.5e-11 71.2 149 39.6
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 1.5e-10 70.5 75 49.3
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 1.5e-10 70.5 81 49.4
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.5e-10 70.5 149 40.9
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.5e-10 69.7 183 36.1
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 3.2e-10 69.3 111 40.5
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 7.2e-10 68.2 80 45.0
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 9.4e-10 67.8 159 35.8
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 1.6e-09 67.0 100 46.0
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 1.6e-09 67.0 137 38.7
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 1.6e-09 67.0 172 35.5
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 1.6e-09 67.0 174 31.6
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 2.1e-09 66.6 120 41.7
Sed0016652 Sechium edule HOM05D023073 ORTHO05D005174 2.1e-09 66.6 130 37.7
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 2.1e-09 66.6 153 32.0
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 3.6e-09 65.9 83 45.8
Gohir.A09G156500 Gossypium hirsutum HOM05D036294 ORTHO05D036268 3.6e-09 65.9 141 40.4
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 4.7e-09 65.5 147 37.4
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 4.7e-09 65.5 71 49.3
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 4.7e-09 65.5 72 45.8
Gorai.006G173200 Gossypium raimondii HOM05D036294 ORTHO05D036268 8.0e-09 64.7 64 60.9
Sed0010435 Sechium edule HOM05D023073 ORTHO05D005174 8.0e-09 64.7 84 45.2
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 1.0e-08 64.3 158 35.4
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 2.3e-08 63.2 169 36.7
Gohir.D09G151850 Gossypium hirsutum HOM05D036294 ORTHO05D036268 3.0e-08 62.8 64 59.4
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 3.0e-08 62.8 69 46.4
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 4.0e-08 62.4 118 42.4
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 4.0e-08 62.4 175 32.6
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 4.0e-08 62.4 173 37.0
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 4.0e-08 62.4 79 44.3
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 4.0e-08 62.4 119 36.1
CsaV3_4G024960 Cucumis sativus L. HOM05D023073 ORTHO05D005174 5.2e-08 62.0 89 41.6
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 6.8e-08 61.6 88 40.9
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 8.8e-08 61.2 112 36.6
MELO3C003127.2 Cucumis melo HOM05D023073 ORTHO05D005174 8.8e-08 61.2 89 40.4
FAN02G3432 Fragaria x ananassa HOM05D018126 ORTHO05D020711 8.8e-08 61.2 107 43.9
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 8.8e-08 61.2 70 48.6
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 1.2e-07 60.8 83 38.6
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 1.5e-07 60.5 109 39.4
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.5e-07 60.5 117 40.2
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.5e-07 60.5 117 40.2
Nitab4.5_0004094g0010 Nicotiana tabacum HOM05D005967 ORTHO05D005174 1.5e-07 60.5 99 40.4
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 2.0e-07 60.1 83 43.4
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.0e-07 60.1 118 41.5
Phvul.008G100200 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 2.0e-07 60.1 173 34.7
FAN05G2792 Fragaria x ananassa HOM05D018126 ORTHO05D020711 2.6e-07 59.7 111 43.2
FAN09G0198 Fragaria x ananassa HOM05D018126 ORTHO05D020711 2.6e-07 59.7 111 43.2
Psat3g141040 Pisum sativum HOM05D005967 ORTHO05D005174 2.6e-07 59.7 80 48.8
SalBow4G0071 Salvia bowleyana HOM05D005967 ORTHO05D005174 4.4e-07 58.9 150 33.3
TPR.G23268 Trifolium pratense HOM05D005967 ORTHO05D005174 4.4e-07 58.9 83 49.4
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 5.7e-07 58.5 94 37.2
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 7.5e-07 58.2 118 41.5
FAN09G2724 Fragaria x ananassa HOM05D018126 ORTHO05D020711 9.8e-07 57.8 96 44.8
MSTRG.19086 Avicennia marina HOM05D005967 ORTHO05D005174 1.3e-06 57.4 159 28.9
SGA_v2.0_scaffold126G33790 Striga asiatica HOM05D005967 ORTHO05D005174 1.3e-06 57.4 95 35.8
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 1.7e-06 57.0 108 38.9
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 1.7e-06 57.0 108 38.9
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 1.7e-06 57.0 106 34.9
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.7e-06 57.0 79 44.3
RcHm_v2.0_Chr3g0466771 Rosa chinensis HOM05D018126 ORTHO05D020711 2.2e-06 56.6 77 49.4
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 2.8e-06 56.2 183 32.2
vmacro20146 Vaccinium macrocarpon HOM05D005967 ORTHO05D005174 2.8e-06 56.2 161 29.2
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 3.7e-06 55.8 157 31.2
Migut.N02671 Erythranthe guttata HOM05D005967 ORTHO05D005174 3.7e-06 55.8 77 42.9
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 3.7e-06 55.8 112 35.7
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 6.3e-06 55.1 88 40.9
FvH4_6g13950 Fragaria vesca HOM05D018126 ORTHO05D020711 6.3e-06 55.1 75 49.3
FAN14G4287 Fragaria x ananassa HOM05D018126 ORTHO05D020711 6.3e-06 55.1 75 49.3
Medtr4g021870 Medicago truncatula HOM05D005967 ORTHO05D005174 6.3e-06 55.1 78 46.2


User provided reference genes

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