Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 6.8e-276 953.4 477 100.0
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.9e-231 804.7 480 82.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.1e-229 798.9 478 79.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.9e-228 793.9 478 80.8
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.0e-227 792.3 478 78.7
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 8.4e-226 786.9 505 75.0
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-225 786.6 477 77.8
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-225 786.6 477 77.8
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.4e-225 786.2 479 80.0
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.7e-224 781.9 477 78.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.0e-223 778.5 479 79.3
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.1e-222 776.5 478 79.5
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.5e-222 776.2 490 77.6
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 9.6e-222 773.5 479 77.9
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.6e-221 772.7 478 79.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.6e-221 772.7 478 79.3
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.4e-220 768.8 478 79.1
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.5e-219 766.1 481 77.3
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.0e-219 765.8 478 75.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 5.8e-219 764.2 484 77.5
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.8e-218 761.5 479 76.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.4e-217 759.6 568 69.7
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.9e-217 759.2 479 74.7
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.5e-217 758.8 478 78.7
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.2e-217 758.4 479 74.9
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.0e-215 751.9 482 75.7
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.0e-215 751.9 482 75.9
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.9e-215 751.5 483 75.8
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 5.1e-215 751.1 480 76.2
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 4.3e-214 748.0 479 76.0
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.8e-213 745.3 479 76.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.1e-212 743.4 479 75.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.4e-212 742.3 479 75.6
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.1e-212 741.5 485 75.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 6.9e-212 740.7 484 75.2
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 9.0e-212 740.3 481 75.1
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 2.6e-211 738.8 479 75.6
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-210 735.7 496 73.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-210 735.3 484 74.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 6.5e-210 734.2 477 74.0
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.4e-209 733.0 478 74.5
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 9.3e-209 730.3 479 74.3
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 9.3e-209 730.3 479 73.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.6e-208 729.6 478 74.9
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.7e-208 728.8 482 73.4
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.7e-208 728.8 478 74.1
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.5e-208 728.4 480 73.1
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 4.6e-208 728.0 478 74.3
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.0e-207 726.9 479 73.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.0e-207 726.9 484 73.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.8e-207 726.1 478 74.3
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.3e-207 725.7 483 73.7
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.9e-207 724.9 480 73.8
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 8.7e-207 723.8 477 73.8
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.1e-206 723.4 479 74.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 4.8e-205 718.0 482 71.6
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.4e-204 716.5 478 72.8
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-204 715.3 516 70.0
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 6.9e-204 714.1 481 73.0
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 9.0e-204 713.8 479 73.3
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.6e-203 712.2 483 72.5
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.6e-203 712.2 484 72.9
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.4e-203 711.8 480 72.3
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 4.5e-203 711.4 475 71.2
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 7.7e-203 710.7 481 72.1
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.3e-202 709.9 479 72.7
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.3e-202 709.9 479 72.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.3e-202 709.9 482 72.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.7e-202 709.5 477 72.7
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.7e-202 709.5 480 71.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 2.9e-202 708.8 477 73.4
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.9e-202 708.8 482 71.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 3.8e-202 708.4 479 73.1
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 3.8e-202 708.4 479 73.1
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 5.0e-202 708.0 482 71.4
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 8.5e-202 707.2 477 72.3
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.1e-201 706.8 479 72.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.9e-201 706.1 481 70.5
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-201 706.1 479 72.2
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 2.7e-200 702.2 481 71.5
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-199 700.3 477 71.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.8e-199 699.5 491 70.7
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 2.3e-199 699.1 477 71.1
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 3.9e-199 698.4 477 72.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 6.7e-199 697.6 503 69.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.0e-198 696.0 440 76.6
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 4.3e-198 694.9 446 73.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.7e-197 693.0 496 69.8
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.8e-197 692.2 507 67.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.1e-196 690.3 477 71.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.8e-196 689.5 515 70.9
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.8e-196 689.5 497 68.0
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.0e-194 683.7 481 69.4
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.2e-192 676.8 477 71.3
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 9.7e-190 667.2 487 67.4
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.8e-189 665.6 415 74.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 6.3e-189 664.5 489 68.1
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.2e-189 664.1 481 68.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 2.0e-187 659.4 429 75.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 3.5e-187 658.7 478 67.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 7.7e-187 657.5 479 64.9
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.1e-185 653.7 487 67.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.5e-185 652.5 478 65.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 7.2e-185 651.0 477 66.0
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.8e-183 646.4 432 71.5
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 3.0e-183 645.6 464 69.8
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.8e-178 628.6 415 72.3
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 4.4e-174 615.1 481 64.9
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.5e-169 599.4 480 61.9
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.4e-167 593.6 558 57.3
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.2e-167 591.7 423 69.5
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.4e-166 589.0 358 83.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 7.5e-166 587.8 474 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 6.3e-165 584.7 488 59.2
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.5e-161 572.8 489 58.9
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.4e-159 567.0 474 57.8
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.8e-155 551.2 413 67.8
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 6.2e-152 541.6 478 60.5
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 6.6e-146 521.5 496 55.8
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.2e-101 373.6 598 38.8
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 2.1e-99 367.1 253 66.8
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 5.9e-94 349.0 525 42.5
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.0e-93 348.2 259 66.4
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.4e-84 315.1 182 77.5
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-83 314.7 211 76.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.2e-78 298.1 386 47.9
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.7e-75 287.0 221 61.5
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.0e-74 285.0 545 36.7
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.3e-72 278.1 250 55.6
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.3e-69 268.1 183 78.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.1e-68 265.0 266 52.3
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.7e-67 259.6 175 69.1
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 4.8e-56 223.0 481 33.5
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-53 214.9 429 35.4
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 4.0e-50 203.4 189 58.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 4.7e-43 179.9 380 33.7
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 8.3e-40 169.1 452 28.1
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-39 168.7 451 30.2
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.5e-36 157.5 212 46.2
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-35 155.2 217 41.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 5.6e-28 129.8 182 48.4
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.4e-18 98.6 65 78.5
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.3e-16 92.0 65 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-16 90.9 120 41.7
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.9e-16 90.9 65 75.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.3e-12 77.4 107 44.9
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 5.2e-10 70.1 68 54.4
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 2.0e-09 68.2 68 57.4
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.4e-09 67.0 51 52.9
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 5.8e-09 66.6 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.4e-07 62.0 84 50.0


User provided reference genes

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